Including Known Interactions in Species Distribution Models

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Documentation for package ‘webSDM’ version 1.1-4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

buildFormula	Builds SDM formulae
coef.SDMfit	Gets regression coefficients from a local model, i.e. a SDMfit object.
coef.trophicSDMfit	Gets regression coefficients from a fitted trophicSDM model.
computeVariableImportance	Computes variable importance of (groups of) variables of fitted a trophicSDM model.
evaluateModelFit	Evaluates prediction goodness of fit
G	Simulated environemntal covariates G
global	Global
loo.trophicSDMfit	Computes an approximation of loo for the whole model
plot.SDMfit	Plots the regression coefficients of a local model
plot.trophicSDMfit	Plots the regression coefficients of a fitted trophicSDM model
plotG	Plots the metaweb G
plotG_inferred	Plot the metaweb G according to the inferred coefficients
predict.SDMfit	Predicts with a local model
predict.trophicSDMfit	Computes predicted values from the fitted trophicSDMfit model
predictPotential	Predicts species potential niche
print.SDMfit	Prints a SDMfit object
print.trophicSDMfit	Prints a fitted trophicSDM model
SDMfit	Fitting a single-species SDM
summary.SDMfit	Summary of a fitted SDMfit model
summary.trophicSDMfit	Summary of a fitted trophicSDM model
trophicSDM	Fitting a trophic Species distribution model
trophicSDM_CV	Compute K-fold cross-validation predicted values from a fitted trophicSDM model
X	Simulated environmental covariates X
Y	Simulated species distribution Y