rbioacc-package |
The 'rbioacc' package. |
.fonte |
A simple implementation of to pivot_longer of tidyr |
.index_col_exposure |
Return column matching "expw", "exps", "expf", "exppw" of a 'data.frame' |
.index_col_metabolite |
Return column matching "concX" of a 'data.frame' where X is metabolite |
.is_equal_rmInf |
Check if two vectors 'x' and 'y' are equal after remove 'Inf' |
bioacc_metric |
Biaccumulation metrics |
bioacc_metric.fitTK |
Biaccumulation metrics |
Chironomus_benzoapyrene |
Data on Chironomus exposed to benzoapyrene |
Chiro_Creuzot |
Data on Chironomus with several exposure routes. |
corrMatrix |
Correlations between parameters: colored matrix |
corrPlot |
Correlations between parameters: pairs plot |
df_ppc |
PPC data.frame |
df_ppc.fitTK |
PPC data.frame |
df_PriorPost |
Data frame of Posterior over Prior |
df_PriorPost.fitTK |
Data frame of Posterior over Prior |
equations |
Equations of the mathematical model used for the fit |
exposure_names |
Retrieve exposure routes names from object |
Exposure_Sialis_lutaria |
Data on Sialis lutaria exposure time series |
fitTK |
Posterior predictive check |
fitTK.stanTKdataCST |
Posterior predictive check |
fitTK.stanTKdataVAR |
Posterior predictive check |
Gammarus_azoxistrobine_1d_Rosch2017 |
Data on Gammarus exposed to azoxistrobine |
Internal_Sialis_lutaria |
Data on Sialis lutaria internal time series |
Male_Gammarus_Merged |
Male 'Gammarus fossarum' exposed to Hg spiked water. Three exposure concentrations were tested in triplicates. The duration of the accumulation phase is 4 days for 0.0000708021 and 0.000283208 mu g.m L^{-1} exposure concentrations, and 7 days for 0.000141604 mu g.m L^{-1} exposure concentration. |
Male_Gammarus_seanine_growth |
Male 'Gammarus pulex' exposed to seanine spiked water. A single exposure concentration was tested. The duration of the accumulation phase is 1.417 days. Three metabolites were quantified. The growth of organism was included. |
Male_Gammarus_Single |
Bio-accumulation data set for _Gammarus fossarum_ exposed to Hg spiked water. |
mcmcTraces |
Traces of MCMC iterations |
modelData |
Create a list giving data and parameters to use in the model inference. |
modelData.data.frame |
Create a list giving data and parameters to use in the model inference. |
modelData_ode |
Create a list giving data and parameters to use in the model inference. |
Oncorhynchus_two |
Data on Oncorhynchus exposition |
plot.bioaccMetric |
Plot function for object of class 'bioaccMetric' |
plot.fitTK |
Plotting method for 'fitTK' objects |
plot.predictTK |
Plotting method for 'predictTK' objects |
plot.predictTKstan |
Plotting method for 'predictTK' objects |
plot_exposure |
Plot exposure profile |
plot_PriorPost |
Plot Posterior over Prior |
plot_PriorPost.df_PP |
Plot Posterior over Prior |
plot_PriorPost.fitTK |
Plot Posterior over Prior |
ppc |
PPC data.frame |
ppc.fitTK |
PPC data.frame |
predict.fitTK |
Prediction function using 'fitTK' object |
predict_manual |
Prediction function using 'fitTK' object |
predict_stan |
Prediction function using 'fitTK' object |
psrf |
Potential Scale Reduction Factors (PSRF) of the parameters |
quantile_table |
Quantiles of parameters |
rbioacc |
The 'rbioacc' package. |
replace_ |
Replace element of a vector |
t95 |
Return the time at 95% depuration of the parent component |
waic |
Widely Applicable Information Criterion (WAIC) |