Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal
Testing
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Documentation for package ‘NIPTeR’ version 1.0.2
Help Pages
| add_samples_controlgroup | Add a sample to an existing control group |
| as_control_group | Convert list of nipt samples to nipt control group |
| bin_bam_sample | Load and bin BAM file |
| calculate_ncv_score | Use an NCV template to calculate a NCV score for sample of interest |
| calculate_z_score | Calculate 'standard' Z-score |
| chi_correct | Performs chi-square based variation reduction |
| chrfractions | Calculate chromosomal fraction |
| diagnose_control_group | Diagnose control group |
| gc_correct | Perform a GC bias correction on nipt sample |
| getcontrolchromosomes | Get control chromosomes names |
| getfractionscontrolgroup | Get all chromosomal fractions of a control group |
| getreadscontrolgroup | Get reads per chromosome per control group sample |
| match_control_group | Best matching control group by least sum of squares |
| nipt_sample | Load and bin BAM file |
| perform_regression | Regression based Z score |
| prepare_ncv | Prepare NCV calculation |
| remove_duplicates_controlgroup | Remove duplicate samples from control group |
| remove_sample_controlgroup | Remove a sample by samplename from control group |
| retrieve_fractions_of_interest | Retrieve the chromosomal fractions of a chromosome of interest |