Data Structure and Manipulations Tool for Host and Viral
Population
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Documentation for package ‘SMITIDstruct’ version 0.0.5
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| SMITIDstruct-package | Data Structure and Manipulation Tool for Host and Viral Population |
| addcode | addcode |
| addHost | addHost |
| addIndex | addIndex |
| addViralObs | addViralObs |
| alleleCount | alleleCount |
| concatViralPop | concatViralPop |
| createAViralPop | createAViralPop |
| createHost | createHost |
| createIndex | createIndex |
| demo.SMITIDstruct.run | demo.SMITIDstruct.run |
| diversity.pDistance | diversity.pDistance |
| diversity.sfs | diversity.sfs |
| getCov | getCov |
| getDate | getDate |
| getDiversity.pDistance | getDiversity.pDistance |
| getDiversity.sfs | getDiversity.sfs |
| getInfosByHostAndTime | getInfosByHostAndTime |
| getStates | getStates |
| getTimeLine | getTimeLine |
| getTimestamp | getTimestamp |
| getTransmissionTree | getTransmissionTree |
| Host | Class Host |
| Host-class | Class Host |
| is.juliendate | is.juliendate |
| is.StringDate | is.StringDate |
| is.timestamp | is.timestamp |
| isInCode | isInCode |
| loadCoords | loadCoords |
| loadCovs | loadCovs |
| loadHost | loadHost |
| loadStates | loadStates |
| loadTree | loadTree |
| loadTreeDF | loadTreeDF |
| loadViralObs | loadViralObs |
| loadViralPop | loadViralPop |
| loadViralPopSet | loadViralPopSet |
| mergeCode | mergeCode |
| plotDiversity.pDistance | plotDiversity.pDistance |
| plotDiversity.sfs | plotDiversity.sfs |
| setStates | setStates |
| simulateStates | simulateStates |
| SMITIDstruct | Data Structure and Manipulation Tool for Host and Viral Population |
| ViralPop | Class ViralPop |
| ViralPop-class | Class ViralPop |
| _PACKAGE | Data Structure and Manipulation Tool for Host and Viral Population |