Evolutionary Diversity Metrics for Raster Data

Documentation for package ‘phyloraster’ version 2.1.0

arg.check	Check for missing arguments in function call
dataR	Presence-absence of 33 Australian tree frogs (Rosauer 2017)
delta.grid	Delta of Diversity Metrics
df2rast	Transform a data.frame to raster
geo.phylo	Calculate phylogenetic community metrics for raster data
geo.phylo.ses	Calculate phylogenetic community metrics and their standardized effect sizes for raster data
inv.range	Calculate the inverse of range size
load.data.rosauer	Load an example dataset with presence-absence data of 33 tree frogs and a phylogenetic tree for this species
phylo.pres	Prepare rasters and phylogenetic tree to run community metrics
range_size	Calculate range size for a set of species using a raster as input
rast.ed	Calculate Evolutionary distinctiveness for raster data
rast.ed.ses	Evolutionary distinctiveness standardized for specie richness
rast.pd	Calculate phylogenetic diversity for raster data
rast.pd.ses	Phylogenetic diversity standardized for species richness
rast.pe	Calculate phylogenetic endemism for raster data
rast.pe.ses	Phylogenetic endemism standardized for specie richness
rast.sr	Calculate species richness for raster data
rast.we	Calculate weighted endemism for raster data
rast.we.ses	Calculate weighted endemism standardized for species richness
shp2rast	Rasterize shapefile
species.ed	Calculate Evolutionary distinctiveness for each species
species.tip.length	Compute species tip length
tip.root.path	Compute tree edge lengths and node paths from root to each tip