Tools for Approximate Bayesian Computation (ABC)


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Documentation for package ‘abc’ version 2.1

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abc Parameter estimation with Approximate Bayesian Computation (ABC)
abc.return Parameter estimation with Approximate Bayesian Computation (ABC)
cv4abc Cross validation for Approximate Bayesian Computation (ABC)
cv4postpr Leave-one-our cross validation for model selection ABC
expected.deviance Expected deviance
getmode Summaries of posterior samples generated by ABC algortithms
gfit Goodness of fit
gfitpca Goodness of fit with principal component analysis
hist.abc Posterior histograms
plot.abc Diagnostic plots for ABC
plot.cv4abc Cross-validation plots for ABC
plot.cv4postpr Barplot of model misclassification
plot.gfit Goodness-of-fit plot for ABC
postpr Estimating posterior model probabilities
summary.abc Summaries of posterior samples generated by ABC algortithms
summary.cv4abc Calculates the cross-validation prediction error
summary.cv4postpr Confusion matrix and misclassification probabilities of models
summary.gfit Calculates the p-value of the goodness-of-fit test.
summary.postpr Posterior model probabilities and Bayes factors