Strain Elevation Tension Spring Embedding

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Documentation for package ‘rsetse’ version 0.5.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

biconnected_network	A simple network made of three bi-connected components
calc_spring_area	Calculate the cross sectional area of the edge
calc_spring_constant	Calculate the spring constant
calc_tension_strain	Calculate line tension and strain from the topology and node embeddings
calc_tension_strain_hd	Calculate line tension and strain from the topology and node embeddings for high dimensional feature networks
create_balanced_blocks	Create balanced blocks
create_node_edge_df	Create dataframe of node and aggregated edge embeddings
create_node_edge_df_hd	Create dataframe of node and aggregated edge embeddings for high dimensional feature networks
generate_peels_network	Create a random Peel network
mass_adjuster	Mass adjuster
prepare_categorical_force	Prepare categorical features for embedding
prepare_continuous_force	Prepare continuous features for embedding
prepare_edges	Prepare network edges
remove_small_components	Remove small components
setse	Basic SETSe embedding
setse_auto	SETSe embedding with automatic drag and timestep selection
setse_auto_hd	SETSe embedding with automatic drag and timestep selection for high-dimensional feature vectors
setse_bicomp	SETSe embedding on each bi-connected component using setse_auto
setse_expanded	SETSe embedding showing full convergence history
setse_shift	setse algorithm with automatic timestep adjustment