Multi-Modal Similarity Matrix Factorization for Integrative Multi-Omics Data Analysis

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Documentation for package ‘M2SMF’ version 2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

affinityMatrix	To calculate the similarity matrix
Cal_NMI	calculate the normalized mutual information.
cost	Calculate the cost
dist2bin	Calculate the agreement-based measurement
dist2chi	Calculate the chi-squared distance
dist2eu	Calculate the Euclidean distance
initialization	initialize the sub-matrix Ci into alpha*Li by SVD
initialize_WL	Initialize from the similairty matrix list
M2SMF	the main part for M2SMF and clustering result
new_modularity	Calculate the modularity
simu_data_gen	Generate simulated data
Standard_Normalization	Normalize the input matrix by column
update_alpha	the function to update alpha
update_L	the function to update Li, for i=1,2,...,N