Programmatic Analysis of Sediment Cores Using Computed Tomography Imaging

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Documentation for package ‘coreCT’ version 1.3.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

conv	Convert a matrix of semi-processed DICOM images to mass and volume of material classes. This is a deprecated version.
convDir	Convert a directory of raw DICOM images to material classes
convert	Convert a matrix of semi-processed DICOM images to mass and volume of material classes
convertDir	Convert a directory of raw DICOM images to material classes
coreHist	Whole-core frequency distribution of Hounsfield units
core_426	Three computed tomography scans from a Spartina alterniflora core
getRoots	Convert a matrix of semi-processed DICOM images to root particle counts, volumes, and surface areas
getRootsDir	Convert a directory of raw DICOM images to root particle counts and surface areas
getSurface	Remove artificial surface layers from processed CT data
rootSize	Convert a matrix of semi-processed DICOM images to root particle counts, volumes, and surface areas
rootSizeDir	Convert a directory of raw DICOM images to root particle counts and surface areas
voxDims	Extract voxel dimensions from DICOM image