Identifying the Pathways Regulated by LncRNA Sets of Interest

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Documentation for package ‘LncPath’ version 1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

drawAHeatMap	Draw a heatmap for the genes of a pathway
findSigGenes	Find genes significantly differentially expressed between two conditions.
geneSetDetail	Gain insight into the detail of the genes in a certain pathway
getExampleData	Get the example data
getNet	Get the background lncRNA-mRNA interaction network
lncPath	Identify pathways synergisticly regulated by lncRNA sets.
lncPath2Table	Simplify the lncPath object into table
LncPathEnvir	The variables in the environment variable 'LncPathEnvir' of the system
plotRunningES	Visualize the Kolmogorov-Smirnov running score of pathway
printSignifResult	Output the details of significant pathways