Epistatic Network Modelling with Forward-Time Simulation

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Documentation for package ‘epinetr’ version 0.96

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Code demos. Use demo() to run them.

Help Pages

addEffects	Attach additive effects to population.
attachEpiNet	Attach epistatic network to population.
epinetr	epinetr
geno100snp	Example genotype matrix.
getAddCoefs	Get additive coefficients.
getAddOffset	Retrieve additive offset.
getAlleleFreqRun	Get allele frequencies.
getComponents	Get phenotypic components.
getEpiNet	Epistatic network retrieval.
getEpiOffset	Retrieve epistatic offset.
getEpistasis	Calculate epistatic interactions.
getGeno	Get population unphased genotypes.
getHaplo	Retrieve haplotypes.
getIncMatrix	Incidence matrix retrieval.
getInteraction	Retrieve interaction values.
getPedigree	Get population pedigree.
getPhased	Get population phased genotypes.
getQTL	QTL retrieval.
getSubPop	Get subpopulation
loadGeno	Load epinetr genotype file.
map100snp	Example map.
plot.EpiNet	Plot epistatic network.
plot.Population	Plot phenotypic value for a population.
Population	Population constructor.
print.Population	Print function for population.
rincmat100snp	Example incidence matrix.
runSim	Run simulation on population.