addEffects |
Attach additive effects to population. |
attachEpiNet |
Attach epistatic network to population. |
epinetr |
epinetr |
geno100snp |
Example genotype matrix. |
getAddCoefs |
Get additive coefficients. |
getAddOffset |
Retrieve additive offset. |
getAlleleFreqRun |
Get allele frequencies. |
getComponents |
Get phenotypic components. |
getEpiNet |
Epistatic network retrieval. |
getEpiOffset |
Retrieve epistatic offset. |
getEpistasis |
Calculate epistatic interactions. |
getGeno |
Get population unphased genotypes. |
getHaplo |
Retrieve haplotypes. |
getIncMatrix |
Incidence matrix retrieval. |
getInteraction |
Retrieve interaction values. |
getPedigree |
Get population pedigree. |
getPhased |
Get population phased genotypes. |
getQTL |
QTL retrieval. |
getSubPop |
Get subpopulation |
loadGeno |
Load epinetr genotype file. |
map100snp |
Example map. |
plot.EpiNet |
Plot epistatic network. |
plot.Population |
Plot phenotypic value for a population. |
Population |
Population constructor. |
print.Population |
Print function for population. |
rincmat100snp |
Example incidence matrix. |
runSim |
Run simulation on population. |