Markov Models for Health Economic Evaluations

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Documentation for package ‘heemod’ version 1.0.1

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A B C D E G J L M N O P R S T U W

-- A --

add_hazards Add Hazards
add_hazards_ Add Hazards
apply_af Apply an Acceleration Factor
apply_hr Apply a Hazard Ratio
apply_or Apply an Odds Ratio
apply_shift Apply a time shift to a survival distribution

-- B --

beta Probability Density Functions for Probabilistic Uncertainty Analysis
binomial Probability Density Functions for Probabilistic Uncertainty Analysis

-- C --

calibrate_model Calibrate Model Parameters
close_cluster Run 'heemod' on a Cluster
cluster Run 'heemod' on a Cluster
combine_probs Combine Probabilities
compute_surv Evaluate Survival Distributions
construct_part_surv_tib construct a survival object from tabular specification

-- D --

define_calibration_fn Define Calibration Function
define_correlation Define a Correlation Structure for Probabilistic Uncertainty Analysis
define_correlation_ Define a Correlation Structure for Probabilistic Uncertainty Analysis
define_distribution Probability Density Functions for Probabilistic Uncertainty Analysis
define_dsa Define a Sensitivity Analysis
define_dsa_ Define a Sensitivity Analysis
define_inflow Define Inflow for a BIA
define_inflow_ Define Inflow for a BIA
define_init Define Initial Counts
define_init_ Define Initial Counts
define_parameters Define Markov Model Parameters
define_parameters_ Define Markov Model Parameters
define_part_surv Define Partitioned Survival
define_part_surv_ Define Partitioned Survival
define_psa Define Parameters Distribution for Probabilistic Analysis
define_psa_ Define Parameters Distribution for Probabilistic Analysis
define_starting_values Define Starting State Values
define_starting_values_ Define Starting State Values
define_state Define a Markov Model State
define_state_ Define a Markov Model State
define_strategy Define a Markov Model
define_strategy_ Define a Markov Model
define_surv_dist Define a Survival Distribution
define_surv_fit Define a Fitted Survival Model
define_surv_spline Define a Restricted Cubic Spline Survival Distribution
define_surv_table Define a survival distribution based on explicit survival probabilities
define_surv_table.character Define a survival distribution based on explicit survival probabilities
define_surv_table.data.frame Define a survival distribution based on explicit survival probabilities
define_transition Define Transition Matrix for Markov Model
define_transition_ Define Transition Matrix for Markov Model
dispatch_strategy Dispatch Values According to Strategy
distributions Probability Density Functions for Probabilistic Uncertainty Analysis

-- E --

export_savi Export PSA Results for SAVI

-- G --

gamma Probability Density Functions for Probabilistic Uncertainty Analysis
get_counts Get State Membership Counts
get_counts.combined_model Get State Membership Counts
get_counts.eval_strategy Get State Membership Counts
get_counts.list Get State Membership Counts
get_counts.run_model Get State Membership Counts
get_counts.updated_model Get State Membership Counts
get_values Get Strategy Values
get_values.combined_model Get Strategy Values
get_values.eval_strategy Get Strategy Values
get_values.list Get Strategy Values
get_values.run_model Get Strategy Values
get_values.updated_model Get Strategy Values
get_who_mr Use WHO Mortality Rate
get_who_mr_memo Use WHO Mortality Rate

-- J --

join Project Beyond a Survival Distribution with Another
join_ Project Beyond a Survival Distribution with Another

-- L --

load_surv_models Load a set of survival fits
logitnormal Probability Density Functions for Probabilistic Uncertainty Analysis
lognormal Probability Density Functions for Probabilistic Uncertainty Analysis
look_up Look Up Values in a Data Frame

-- M --

mix Mix Two or More Survival Distributions
mix_ Mix Two or More Survival Distributions
modify Modify Object
modify.state Define a Markov Model State
modify.uneval_matrix Define Transition Matrix for Markov Model
modify.uneval_parameters Define Markov Model Parameters
multinomial Probability Density Functions for Probabilistic Uncertainty Analysis

-- N --

normal Probability Density Functions for Probabilistic Uncertainty Analysis

-- O --

or_to_prob Convenience Functions to Compute Probabilities

-- P --

part_survs_from_surv_inputs Convert saved fits to partitioned survival objects
plot.dsa Plot Sensitivity Analysis
plot.psa Plot Results of Probabilistic Analysis
plot.run_model Plot Results of a Markov Model
plot.surv_object Plot general survival models
plot.uneval_matrix Define Transition Matrix for Markov Model
plot.updated_model Run Model on New Data
poisson Probability Density Functions for Probabilistic Uncertainty Analysis
probability Convenience Functions to Compute Probabilities
prob_to_prob Convenience Functions to Compute Probabilities

-- R --

rate_to_prob Convenience Functions to Compute Probabilities
reindent_transition Reindent Transition Matrix
rescale_discount_rate Rescale Discount Rate
rescale_prob Convenience Functions to Compute Probabilities
rr_to_prob Convenience Functions to Compute Probabilities
run_bcea Use the BCEA package
run_dsa Run Sensitivity Analysis
run_model Run Markov Model
run_model_ Run Markov Model
run_model_tabular Run Analyses From Files
run_psa Run Probabilistic Uncertainty Analysis

-- S --

set_covariates Set Covariates of a Survival Distribution
set_covariates_ Set Covariates of a Survival Distribution
status_cluster Run 'heemod' on a Cluster
summary.run_model Summarise Markov Model Results
summary.surv_shift Summarize surv_shift objects

-- T --

triangle Probability Density Functions for Probabilistic Uncertainty Analysis

-- U --

update.run_model Run Model on New Data
update_model Run Model on New Data
use_cluster Run 'heemod' on a Cluster
use_distribution Probability Density Functions for Probabilistic Uncertainty Analysis

-- W --

who_mortality Use WHO Mortality Rate