Analysis of Parent-Specific DNA Copy Numbers
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Documentation for package ‘PSCBS’ version 0.67.0
Help Pages
| PSCBS-package | Package PSCBS |
| callSegmentationOutliers | Calls/drops single-locus outliers along the genome |
| callSegmentationOutliers.data.frame | Calls/drops single-locus outliers along the genome |
| callSegmentationOutliers.default | Calls/drops single-locus outliers along the genome |
| CBS | The CBS class |
| dropSegmentationOutliers | Calls/drops single-locus outliers along the genome |
| dropSegmentationOutliers.data.frame | Calls/drops single-locus outliers along the genome |
| dropSegmentationOutliers.default | Calls/drops single-locus outliers along the genome |
| findLargeGaps | Identifies gaps of a genome where there exist no observations |
| findLargeGaps.data.frame | Identifies gaps of a genome where there exist no observations |
| findLargeGaps.default | Identifies gaps of a genome where there exist no observations |
| gapsToSegments | Gets the genomic segments that are complementary to the gaps |
| gapsToSegments.data.frame | Gets the genomic segments that are complementary to the gaps |
| NonPairedPSCBS | The NonPairedPSCBS class |
| PairedPSCBS | The PairedPSCBS class |
| PSCBS | The PSCBS class |
| segmentByCBS | Segment genomic signals using the CBS method |
| segmentByCBS.CBS | Segment genomic signals using the CBS method |
| segmentByCBS.CNA | Segment genomic signals using the CBS method |
| segmentByCBS.data.frame | Segment genomic signals using the CBS method |
| segmentByCBS.default | Segment genomic signals using the CBS method |
| segmentByNonPairedPSCBS | Segment total copy numbers and allele B fractions using the Non-paired PSCBS method |
| segmentByNonPairedPSCBS.data.frame | Segment total copy numbers and allele B fractions using the Non-paired PSCBS method |
| segmentByNonPairedPSCBS.default | Segment total copy numbers and allele B fractions using the Non-paired PSCBS method |
| segmentByNonPairedPSCBS.PairedPSCBS | Segment total copy numbers and allele B fractions using the Non-paired PSCBS method |
| segmentByPairedPSCBS | Segment total copy numbers and allele B fractions using the Paired PSCBS method |
| segmentByPairedPSCBS.data.frame | Segment total copy numbers and allele B fractions using the Paired PSCBS method |
| segmentByPairedPSCBS.default | Segment total copy numbers and allele B fractions using the Paired PSCBS method |
| segmentByPairedPSCBS.PairedPSCBS | Segment total copy numbers and allele B fractions using the Paired PSCBS method |