PSCBS-package |
Package PSCBS |
callSegmentationOutliers |
Calls/drops single-locus outliers along the genome |
callSegmentationOutliers.data.frame |
Calls/drops single-locus outliers along the genome |
callSegmentationOutliers.default |
Calls/drops single-locus outliers along the genome |
CBS |
The CBS class |
dropSegmentationOutliers |
Calls/drops single-locus outliers along the genome |
dropSegmentationOutliers.data.frame |
Calls/drops single-locus outliers along the genome |
dropSegmentationOutliers.default |
Calls/drops single-locus outliers along the genome |
findLargeGaps |
Identifies gaps of a genome where there exist no observations |
findLargeGaps.data.frame |
Identifies gaps of a genome where there exist no observations |
findLargeGaps.default |
Identifies gaps of a genome where there exist no observations |
gapsToSegments |
Gets the genomic segments that are complementary to the gaps |
gapsToSegments.data.frame |
Gets the genomic segments that are complementary to the gaps |
NonPairedPSCBS |
The NonPairedPSCBS class |
PairedPSCBS |
The PairedPSCBS class |
PSCBS |
The PSCBS class |
segmentByCBS |
Segment genomic signals using the CBS method |
segmentByCBS.CBS |
Segment genomic signals using the CBS method |
segmentByCBS.CNA |
Segment genomic signals using the CBS method |
segmentByCBS.data.frame |
Segment genomic signals using the CBS method |
segmentByCBS.default |
Segment genomic signals using the CBS method |
segmentByNonPairedPSCBS |
Segment total copy numbers and allele B fractions using the Non-paired PSCBS method |
segmentByNonPairedPSCBS.data.frame |
Segment total copy numbers and allele B fractions using the Non-paired PSCBS method |
segmentByNonPairedPSCBS.default |
Segment total copy numbers and allele B fractions using the Non-paired PSCBS method |
segmentByNonPairedPSCBS.PairedPSCBS |
Segment total copy numbers and allele B fractions using the Non-paired PSCBS method |
segmentByPairedPSCBS |
Segment total copy numbers and allele B fractions using the Paired PSCBS method |
segmentByPairedPSCBS.data.frame |
Segment total copy numbers and allele B fractions using the Paired PSCBS method |
segmentByPairedPSCBS.default |
Segment total copy numbers and allele B fractions using the Paired PSCBS method |
segmentByPairedPSCBS.PairedPSCBS |
Segment total copy numbers and allele B fractions using the Paired PSCBS method |