Bioacoustic Analysis and Publication Tools

Documentation for package ‘sonicscrewdriver’ version 0.0.6

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A B C D E F G H J L M N P R S T U V W Y Z misc

-- A --

ab_diel_traits	Convert text times of day in audioblast traits to numeric values
ab_seqss_nearestStart	Nearest start time
addProcess	Add a process to a Tagged Wave or WaveMC object
addProcess-method	Add a process to a Tagged Wave or WaveMC object
addSpectra	Add two spectra from seewave
allChannels	Apply a function to all channels of a Wave or WaveMC object
annotation	Create a new Annotation object
Annotation-class	A S4 class for annotations
audioblast	Get data or analyses from audioBlast
audioblastDownload	Download audio files from audioBlast
audiomothConfig	Read AudioMoth configuration file
audiomothWave	Read AudioMoth metadata from a wave file
audio_filesize	Calculated size of raw audio files
autoBandPass	Automatic Band Pass Filter

-- B --

bandpass	Simple bandpass filter
beatComplexity	Beat spectrum complexity
beatSpectrum	Computes a beat spectrum
birdNetAnalyse	Analyse sound files using BirdNET-Analyzer
birdNetInstall	Install the BirdNET environment

-- C --

channels_se	Channels for sound ecology
circularise	Circularise a dataset
concat	Concatenate two or more Wave-like objects.
concat-method	Concatenate two or more Wave-like objects.
convert2bytes	Convert bits to bytes
convert2Celsius	Convert temperature to Celsius
convert2degrees	Convert angle to degrees
convert2dyne_cm2	Convert pressure to dyne per square centimetre
convert2Fahrenheit	Convert temperature to Fahrenheit
convert2Kelvin	Convert temperature to Kelvin
convert2Pascals	Convert pressure to Pascals
convert2radians	Convert angle to radians
convert2seconds	Convert time to seconds
corWaveMC	Correlate channels in a WaveMC object
cutws	Cut wave by samples

-- D --

data2Wave	Convert data into a Wave object
dayPhase	Phase of day
dayPhases	Phases of day
daysPhases	Phases of days
defaultCluster	Create Default Cluster for Windowing
dielFraction	Calculate the fraction of a day given by a value
dielHistogram	Diel Histogram
dielLabels	Generate labels for a diel plot
dielPlot	Create a diel plot
dielPositions	Generate positions of labels for a diel plot
dielRings	Plot rings on a diel plot
dolbear	Dolbear's law
dutyCycle	Calculate the duty cycle of a wave

-- E --

emptyDiel	Create an empty diel plot
emptyYearly	Create an empty yearly plot
entropyStats	Various measurements of frequency values for a Wave object

-- F --

filterWave	Apply a WaveFilter object to a Wave object
frequencySound	Get the frequency from wavelength and speed of sound
frequencyStats	Various measurements of frequency values for a Wave object

-- G --

generateNoise	Add noise to a Wave like object
generateTimeMask	Generate time masked Wave-like objects
generateTimeShift	Generated time-shifted versions of a Wave-like object
gs_transcribe	Google Speech API Transcribe

-- H --

humanBytes	Converts bytes in human readable form
humanTime	Converts time to human readable form

-- J --

jitter

Calculate the jitter in a Wave object

-- L --

labelPadding	Pad labels with interval
labelReduction	Combines labels which overlap into single continuous regions

-- M --

map2RGB

Map three vectors to RGB

-- N --

naturalFrequency	Calculate the natural frequency
ntd	Natural Time Domain

-- P --

parseFilename	Parse a filename
pd_dietrich2004	Pulse detection using Dietrich (2004)
pd_simple	Simplified pulse detection using Dietrich (2004)
pseudoWave	Create a PseudoWave object
PseudoWave-class	An S4 class to represent a PseudoWave object that is converted to a Wave object when operated on.
pulse	Generate a single pulse
pulseDetection	Pulse detection
pulseIntervals	Pulse intervals

-- R --

radarPower	The radar equation
radarRange	Radar range
radialPolygon	Plot a radial polygon
rainfallDetection	Rainfall detection
readAudacityLabels	Read an Audacity label file
readAudio	Read an audio file
readBirdNet	Read output files from BirdNet Analyser
readRespeaker6	Read a file from Seeed Studio Respeaker 6 mic array
referenceIntensity	Reference intensity
referencePressure	Reference pressure
region	Specify a region with a file to analyse
resonantFrequency	Calculate the resonant frequency

-- S --

sDuration	Sample duration
sheepFrequencyStats	Sheep frequencyStats
shimmer	Calculate the shimmer in a Wave object
soundSpeed	Calculate the speed of sound in a medium
specStats	Calculate and plot statistics on a frequency spectrum
ste	Short term energy
STP	STP: Standard Temperature and Pressure
subtractSpectra	Subtract two spectra from seewave
sweptsine	Generate a frequency-swept sine wave

-- T --

TaggedWave-class	A S4 class for tagged waves
TaggedWaveMC-class	A S4 class for tagged multi-channel waves
tagWave	Tag a Wave or WaveMC object
TimeRegion-class	An S4 class to represent a TimeRegion within a Wave object.
tSamples	Samples per time period
typicalVolume	Typical volumes
tzRot	Converts a timezone offset into a rotation

-- U --

untagWave	Untag a TaggedWave or TaggedWaveMC object
upsample	Upsample a wave

-- V --

validateIsWave

Check an object is a Wave object

-- W --

WaveFilter-class	WaveFilter object for audio filters
windowing	Windowing Function for Wave Objects
writeAudacityLabels	Write an Audacity label file

-- Y --

yearlyFraction	Calculate the fraction of a year given by a value
yearlyLabels	Generate labels for a yearly plot
yearlyPlot	Create a yearly plot
yearlyPositions	Generate positions of labels for a yearly plot

-- Z --

zerocross	Identify zero crossings in a Wave object
zeroSpectrum	Zero spectrum

-- misc --

*-method	PseudoWave scalar manipulation
*-method	Numeric multiplication by PseudoWave
+-method	PseudoWave scalar addition
+-method	Numeric addition by PseudoWave
--method	PseudoWave scalar subtraction
/-method	PseudoWave scalar division
[-method	Allow subsetting a Wave object with a TimeRegion