ruv-package |
Detect and Remove Unwanted Variation using Negative Controls |
collapse.replicates |
Collapse Replicates |
design.matrix |
Design Matrix |
getK |
Get K |
get_empirical_variances |
Get empirical variances |
google_search |
Google Search URL |
inputcheck1 |
Input Check One |
invvar |
Inverse Method Variances |
projectionplotvariables |
Projection Plot Variables |
randinvvar |
(Randomization) Inverse Method Variances |
replicate.matrix |
Replicate (Mapping) Matrix |
residop |
Residual Operator |
ruv |
Detect and Remove Unwanted Variation using Negative Controls |
RUV1 |
RUV-I |
RUV2 |
Remove Unwanted Variation, 2-step |
RUV4 |
Remove Unwanted Variation, 4-step |
RUVI |
RUV-I |
RUVIII |
RUV-III |
RUVinv |
Remove Unwanted Variation, inverse method |
RUVrinv |
Remove Unwanted Variation, ridged inverse method |
ruv_cancorplot |
RUV Canonical Correlation Plot |
ruv_ecdf |
RUV P-value Empirical CDF Plot |
ruv_hist |
RUV P-value Histogram Plot |
ruv_projectionplot |
RUV Projection Plot |
ruv_rankplot |
RUV Rank Plot |
ruv_residuals |
RUV Residuals |
ruv_rle |
RUV RLE Plot |
ruv_scree |
RUV Scree Plot |
ruv_shiny |
RUV Shiny App |
ruv_summary |
RUV Summary |
ruv_svdgridplot |
RUV SVD Grid Plot |
ruv_svdplot |
RUV SVD Plot |
ruv_varianceplot |
RUV Variance Plot |
ruv_volcano |
RUV Volcano Plot |
sigmashrink |
Empirical Bayes shrinkage estimate of sigma^2 |
variance_adjust |
Adjust Estimated Variances |