Biclustering with Missing Data

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Documentation for package ‘biclustermd’ version 0.2.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

biclustermd-package	biclustermd: A package to bicluster data with missing values
as.Biclust	Convert a 'biclustermd' object to a 'Biclust' object
autoplot.biclustermd	Make a heatmap of sparse biclustering results
autoplot.biclustermd_sim	Plot similarity measures between two consecutive biclusterings.
autoplot.biclustermd_sse	Plot sums of squared errors (SSEs) consecutive biclustering iterations.
biclustermd	Bicluster data with non-random missing values
binary_vector_gen	Make a binary vector with all values equal to zero except for one
cell_heatmap	Make a heat map of bicluster cell sizes.
cell_mse	Make a data frame containing the MSE for each bicluster cell
cluster_iteration_sum_sse	Calculate the sum cluster SSE in each iteration
col.names	A generic to gather column names
col.names.biclustermd	Get data matrix column names and their corresponding column cluster membership
col_cluster_names	Get column names in each column cluster
compare_biclusters	Compare two biclusterings or a pair of partition matrices
fill_empties_P	Randomly select a column prototype to fill an empty column prototype with
fill_empties_Q	Randomly select a row prototype to fill an empty row prototype with
format_partition	Format a partition matrix
gather.biclustermd	Gather a biclustermd object
jaccard_similarity	Compute the Jaccard similarity coefficient for two clusterings
mse_heatmap	Make a heatmap of cell MSEs
partition_gen	Generate an intial, random partition matrix with N objects into K subsets/groups.
partition_gen_by_p	Create a partition matrix with a partition vector p
part_matrix_to_vector	Convert a partition matrix to a vector
position_finder	Find the index of the first nonzero value in a vector
print.biclustermd	Print an object of class biclustermd
reorder_biclust	Reorder a bicluster object for making a heat map
rep_biclustermd	Repeat a biclustering to achieve a minimum SSE solution
results_heatmap	Make a heatmap of sparse biclustering results
row.names.biclustermd	Get data matrix row names and their corresponding row cluster membership
row_cluster_names	Get row names in each row cluster
runtimes	Algorithm run time data
synthetic	Synthetic data for examples.
tune_biclustermd	Bicluster data over a grid of tuning parameters