apply_amplification_efficiency |
Apply PCR amplification efficiency estimation to a data.frame |
apply_delta_delta_ct |
Apply the delta delta Ct calculation to a data.frame |
calc_delta_delta_ct |
Calculate delta delta Ct |
calc_n_copies |
Calculate number of target copies |
calc_sample_sizes |
Calculate sample sizes |
coords_to_iso3 |
Convert coordinates to ISO country code |
download_admin_data |
Download administrative boundaries from geoBoundaries API |
download_elevation_data |
Download DEM from AWS Terrain Tiles |
download_worldpop_data |
Download WorldPop population raster data |
est_amplification_efficiency |
Estimate PCR amplification efficiency |
get_admin_data |
Get administrative data for a set of points |
get_elevation_data |
Get elevation data |
get_esi_data |
Get Evaporative Stress Index (ESI) data |
get_geoboundaries_api_data |
Request metadata from GeoBoundaries API |
get_hydro_data |
Get hydrological data |
get_population_catchment |
Get population counts within catchments of sampling sites |
get_population_radius |
Get population counts within a radius of sampling sites |
get_precip_data |
Get precipitation data |
get_river_discharge_data |
Get river discharge data |
get_temp_data |
Get temperature data |
template_WES_data |
Template environmental sampling data |
template_WES_standard_curve |
Template standard curve data |