Tools for Analyzing Wastewater and Environmental Sampling Data
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Documentation for package ‘WES’ version 1.0.0
Help Pages
| apply_amplification_efficiency | Apply PCR amplification efficiency estimation to a data.frame |
| apply_delta_delta_ct | Apply the delta delta Ct calculation to a data.frame |
| calc_delta_delta_ct | Calculate delta delta Ct |
| calc_n_copies | Calculate number of target copies |
| calc_sample_sizes | Calculate sample sizes |
| coords_to_iso3 | Convert coordinates to ISO country code |
| download_admin_data | Download administrative boundaries from geoBoundaries API |
| download_elevation_data | Download DEM from AWS Terrain Tiles |
| download_worldpop_data | Download WorldPop population raster data |
| est_amplification_efficiency | Estimate PCR amplification efficiency |
| get_admin_data | Get administrative data for a set of points |
| get_elevation_data | Get elevation data |
| get_esi_data | Get Evaporative Stress Index (ESI) data |
| get_geoboundaries_api_data | Request metadata from GeoBoundaries API |
| get_hydro_data | Get hydrological data |
| get_population_catchment | Get population counts within catchments of sampling sites |
| get_population_radius | Get population counts within a radius of sampling sites |
| get_precip_data | Get precipitation data |
| get_river_discharge_data | Get river discharge data |
| get_temp_data | Get temperature data |
| template_WES_data | Template environmental sampling data |
| template_WES_standard_curve | Template standard curve data |