annual_growth_rate |
Calculate annual growth rate |
config |
Create a 'config' object |
config_ex_1 |
Simple model configuration example |
config_ex_2 |
Simple model configuration example using delays |
constant_fun |
Constant function |
density_fun |
Density dependent mortality |
expo_fun |
Exponential function |
feed_fun |
Probability of actively questing and then finding a host |
find_n_feed |
Probability of finding a host and successfully feeding on it |
format.predictor_spec |
Format a 'predictor_spec' |
get_pred_from_table |
Get a predictor from input data |
growth_rate |
Calculate multiplicative growth rate of population |
host_example_config |
Configuration for showing how we can modify host community data |
infect_example_config |
Configuration for showing infection dynamics |
infect_fun |
Probability that a feeding tick becomes engorged infected or uninfected |
life_cycle |
Create a 'life_cycle' from a collection of 'transition's |
new_transition_function |
Constructor for transition functions |
ogden2005 |
Configuration for Ixodes scapularis population dynamics model from Ogden et al. 2005 |
ogden_feed_fun |
Probability of actively questing times constant host finding probability |
parameters |
Create a set of parameters |
predictors |
Create a table of 'predictors' |
predictor_spec |
Specify how a single predictor should be used |
print.predictor_spec |
Print a 'predictor_spec' |
print.transition |
Print a transition |
run |
Run the model |
snow_cover_fun |
Mortality as a function of whether there is a snow on the ground |
temp_example_config |
Configuration for showing how we can modify climate data |
transition |
Create a 'transition' object |
winter_tick |
Configuration for winter tick population dynamics model |