Log Fold Change Distribution Tools for Working with Ratios of Counts

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Documentation for package ‘lfc’ version 0.2.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

CenterMedian	Subtract the median of the given vector (for normalizing log2 fold changes).
dlfc	The log2 fold change distribution
EmpiricalBayesPrior	Computes the prior parameters (i.e. pseudocounts incremented by 1) for the log2 fold change distribution
ltop	Inverse logit transformation to obtain proportion representation from the log fold change representation.
NormLFC	Standard LFC effect size estimator
plfc	The log2 fold change distribution
PsiLFC	Psi LFC effect size estimator
PsiLFC.se	Psi LFC effect size estimator
ptol	Logit transformation to obtain the log fold change representation from the proportion representation.
qlfc	The log2 fold change distribution
results	Psi LFC effect size estimator for DESeq2
rlfc	The log2 fold change distribution