Mean Partition, Uncertainty Assessment, Cluster Validation and Visualization Selection for Cluster Analysis

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Documentation for package ‘OTclust’ version 1.0.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

align	Optimal Transport Alignment
clustCPS	CPS Analysis for cluster validation..
cplot	Covering Point Set Plot
CPS	CPS Analysis on a collection of clustering results
ensemble	Generate an ensemble of partitions.
jaccard	Jaccard similarity matrix.
mplot	Membership Heat Map
otclust	Mean partition by optimal transport alignment.
otplot	Visualize a partition on 2 dimensional space
perturb	Perturb data by adding noise, bootstrapping or mix-up
pplot	Point-wise Uncertainty Assessment
preprocess	Data preprocessing
sim1	Simulated toy data
visCPS	CPS Analysis on selecting visualization method.
vis_pollen	Single cell gene visualization data from Pollen's paper
wassDist	Wasserstein distance between two partitions.
YAN	Single cell gene data from Yan's paper