Temporal Ecological Niche Models

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Documentation for package ‘tenm’ version 0.5.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

abronia	Occurrence records of Abronia graminea
bg_by_date	Function to obtain environmental background organized by date
cells2samp	Helper function to randomly select cell IDs for generating environmental background data.
clean_dup	Function to thin longitude and latitude data
clean_dup_by_date	Function to thin occurrence data Cleans up duplicated longitude and latitude data by year using a specified distance threshold. The distance can be specified as a geographic distance or, if a raster_mask is provided, as a pixel distance.
colors	Colors for plotting
correlation_finder	Function to find strong correlations within environmental predictors
cov_center	Function to compute the covariance matrix of an ellipsoid niche model.
ellipsoid_omr	Compute omission rate and statistical metrics for ellipsoid models.
ellipsoid_projection	ellipsoid_projection: function to project an ellipsoid model
ellipsoid_selection	ellipsoid_selection: Performs models selection for ellipsoid models
ex_by_date	Extract environmental data by date
inEllipsoid	inEllipsoid: Determine if a point is inside or outside an ellipsoid
metaras	Helper function to obtain layer name from a raster layer
plot_ellipsoid	Function to plot ellipsoid models in E-space
predict	Predict the potential distribution of species based on environmental conditions
predict-method	Predict the potential distribution of species based on environmental conditions
pROC	Partial ROC calculation for Niche Models
sp.temporal.bg-class	S3 classes to organize data and results of 'tenm' objects
sp.temporal.env-class	S3 classes to organize data and results of 'tenm' objects
sp.temporal.modeling-class	S3 classes to organize data and results of 'tenm' objects
sp.temporal.selection-class	S3 classes to organize data and results of 'tenm' objects
sp_temporal_data	Function to create a Species Temporal Data object (STD object).
tdf2swd	Temporal data.frame to Samples With Data format
tenm_selection	Function to find the best n-dimensional ellipsoid model