Geographical Risk Analysis Based on Habitat Connectivity

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Documentation for package ‘geohabnet’ version 2.1.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.grast_ro	GlobalRast class
.indices	Internal function to extract risk indices from a list of crop rasters.
.model_ob	GeoModel class
.rast_ro	GeoRaster class
betweeness	Calculation on network metrics a.k.a centralities.
closeness	Calculation on network metrics a.k.a centralities.
connectivity	Calculate and plot maps
cropharvest_rast	Get raster object for crop
crops_rast	Get sum of rasters for individual crops
degree	Calculation on network metrics a.k.a centralities.
dist_methods	Distance methods supported
ev	Calculation on network metrics a.k.a centralities.
GeoModel-class	GeoModel class
GeoNetwork-class	GeoNetwork
GeoRasters-class	GeoRaster class
geoscale_param	Get geographical scales from the parameters
get_parameters	Get Parameters
get_rasters	Get rasters object from parameters
GlobalRast-class	GlobalRast class
global_scales	Global geographical extent
Gmap-class	Gmap class
gplot	Plot a Raster* object
hci_diff	Calculate difference map
hci_mean	Calculate mean of raster objects
hci_variance	Calculate variance of CCRI
host_density<-	Set the host density.
host_density<--method	GeoNetwork
inv_powerlaw	Dispersal kernels
load_parameters	Load Parameters from YAML File
mapspam	Supported sources for Mapspam
monfreda	Supported sources for monfreda
msean	Sensitivity analysis across maps of habitat connectivity
msean_onrast	Run sensitivity analysis
ndplot	Network density
ndplot-method	Network density
neg_expo	Dispersal kernels
nn_sum	Calculation on network metrics a.k.a centralities.
node_strength	Calculation on network metrics a.k.a centralities.
pagerank	Calculation on network metrics a.k.a centralities.
reset_params	Reset parameters.yaml
reso	Get resolution value
RiskMap-class	RiskMap class
risk_indices	Get risk indices
sa_onrasters	Run sensitivity analysis
sean	Sensitivity analysis across maps of habitat connectivity
search_crop	Search for crop
sensitivity_analysis	Sensitivity analysis for habitat connectivity
setmaps	Gmap class
setmaps-method	Sets the map slots in the Gmap object.
setprops	Set properties of the GeoModel object.
setprops-method	Set properties of the GeoModel object.
set_global_scales	Set global geographical extent
set_parameters	Set Parameters
sp_rast	Raster for mapspam crop.
supported_metrics	Returns metrics currently supported in the analysis.
supported_sources	Get supported sources of crops
tiff_torast	Get raster object from tif file