Tracing Information Flow for Inter-Software Comparisons in Mass
Spectrometry-Based Bottom-Up Proteomics
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Documentation for package ‘flowTraceR’ version 0.1.0
Help Pages
| flowTraceR-package | flowTraceR: a package for standardization of level information and tracking inter-software differences in bottom-up label-free proteomics |
| analyze_connected_levels | Analysis of connected levels |
| analyze_unknown_mods | Analysis of unknown modifications |
| connect_traceR_levels | Connects traced levels |
| convert_all_levels | Conversion of software specific levels |
| convert_modified_peptides | Conversion of software specific modified peptide entries |
| convert_precursor | Conversion of software specific precursor entries |
| convert_proteingroups | Conversion of software specific proteinGroups |
| flowTraceR | flowTraceR: a package for standardization of level information and tracking inter-software differences in bottom-up label-free proteomics |
| get_example | Create example data |
| get_unknown_mods | Check of converted modifications |
| trace_all_levels | Trace common and unique identifications between different software outputs for all levels |
| trace_level | Trace common and unique identifications between different software outputs |
| trace_unique_common_pg | Trace unique_common categorization for proteinGroup level |