Simulation of Ecological (and Other) Dynamic Systems
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Documentation for package ‘simecol’ version 0.8-14
- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.
- Package NEWS.
Help Pages
A C D E F G I L M N O P R S T U misc
| simecol-package | Simulation of Ecological (and Other) Dynamic Systems |
-- A --
| addtoenv | Add Functions from a Non-nested List of Named Functions to a Common Environment |
| alpha2rho | Generate Plackett Bivariate Random Numbers |
| approxTime | Linear Interpolation with Complete Matrices or Data Frames |
| approxTime1 | Linear Interpolation with Complete Matrices or Data Frames |
| as.list-method | Coerce simObj Objects to Lists and Vice-Versa |
| as.simObj | Coerce simObj Objects to Lists and Vice-Versa |
| as.simObj-method | Coerce simObj Objects to Lists and Vice-Versa |
-- C --
| CA | Stochastic Cellular Automaton |
| chemostat | Chemostat Model |
| coef-method | Show Results of Model Fits |
| coerce-method | Coerce simObj Objects to Lists and Vice-Versa |
| conway | The Classical Coway's Game of Life |
-- D --
| deviance-method | Show Results of Model Fits |
| diffusion | A Random Walk Particle Diffusion Model |
-- E --
| editInit | Edit 'parms', 'init' or 'times' Slot of 'simecol' Objects |
| editInit-method | Edit 'parms', 'init' or 'times' Slot of 'simecol' Objects |
| editInit-methods | Edit 'parms', 'init' or 'times' Slot of 'simecol' Objects |
| editParms | Edit 'parms', 'init' or 'times' Slot of 'simecol' Objects |
| editParms-method | Edit 'parms', 'init' or 'times' Slot of 'simecol' Objects |
| editParms-methods | Edit 'parms', 'init' or 'times' Slot of 'simecol' Objects |
| editTimes | Edit 'parms', 'init' or 'times' Slot of 'simecol' Objects |
| editTimes-method | Edit 'parms', 'init' or 'times' Slot of 'simecol' Objects |
| editTimes-methods | Edit 'parms', 'init' or 'times' Slot of 'simecol' Objects |
| eightneighbors | Count Number of Neighbours in a Rectangular Cellular Grid. |
| eightneighbours | Count Number of Neighbours in a Rectangular Cellular Grid. |
| equations | Accessor Functions for 'simObj' Objects |
| equations-method | Accessor Functions for 'simObj' Objects |
| equations-methods | Accessor Functions for 'simObj' Objects |
| equations<- | Accessor Functions for 'simObj' Objects |
| equations<--method | Accessor Functions for 'simObj' Objects |
| equations<--methods | Accessor Functions for 'simObj' Objects |
-- F --
| fitOdeModel | Parameter Fitting for odeModel Objects |
| fromtoby | Create Regular Sequence from 'from-to-by' Vector |
| functionOrcharacter-class | Helpful Union Classes |
| functionOrNULL-class | Helpful Union Classes |
-- G --
| gridModel | Generating-functions (Constructors) to Create Objects of Classes 'odeModel', 'rwalkModel' and 'gridModel'. |
| gridModel-class | Simulation of Ecological (and Other) Dynamic Systems |
-- I --
| indbasedModel | Generating-functions (Constructors) to Create Objects of Classes 'odeModel', 'rwalkModel' and 'gridModel'. |
| indbasedModel-class | Simulation of Ecological (and Other) Dynamic Systems |
| init | Accessor Functions for 'simObj' Objects |
| init-method | Accessor Functions for 'simObj' Objects |
| init-methods | Accessor Functions for 'simObj' Objects |
| init<- | Accessor Functions for 'simObj' Objects |
| init<--method | Accessor Functions for 'simObj' Objects |
| init<--methods | Accessor Functions for 'simObj' Objects |
| initfunc | Accessor Functions for 'simObj' Objects |
| initfunc-method | Accessor Functions for 'simObj' Objects |
| initfunc-methods | Accessor Functions for 'simObj' Objects |
| initfunc<- | Accessor Functions for 'simObj' Objects |
| initfunc<--method | Accessor Functions for 'simObj' Objects |
| initfunc<--methods | Accessor Functions for 'simObj' Objects |
| initialize-method | Methods for Function 'initialize' in Package 'simecol' |
| initialize-methods | Methods for Function 'initialize' in Package 'simecol' |
| inputs | Accessor Functions for 'simObj' Objects |
| inputs-method | Accessor Functions for 'simObj' Objects |
| inputs-methods | Accessor Functions for 'simObj' Objects |
| inputs<- | Accessor Functions for 'simObj' Objects |
| inputs<--method | Accessor Functions for 'simObj' Objects |
| inputs<--methods | Accessor Functions for 'simObj' Objects |
| iteration | Discrete Simulation |
| iteration-method | Discrete Simulation |
| iteration-methods | Discrete Simulation |
-- L --
| listOrdata.frame-class | Helpful Union Classes |
| listOrNULL-class | Helpful Union Classes |
| lv | Lotka-Volterra Predator-Prey Model |
| lv3 | Lotka-Volterra-Type Model with Resource, Prey and Predator |
-- M --
| main | Accessor Functions for 'simObj' Objects |
| main-method | Accessor Functions for 'simObj' Objects |
| main-methods | Accessor Functions for 'simObj' Objects |
| main<- | Accessor Functions for 'simObj' Objects |
| main<--method | Accessor Functions for 'simObj' Objects |
| main<--methods | Accessor Functions for 'simObj' Objects |
| mixNamedVec | Mix Two Named Vectors, Resolving Name Conflicts |
| modelFit-class | Class of Fitted Model Parameters |
-- N --
| neighbors | Count Number of Neighbours on a Rectangular Grid. |
| neighbours | Count Number of Neighbours on a Rectangular Grid. |
| numericOrlist-class | Helpful Union Classes |
-- O --
| observer | Get or Set an Observer Functions to an 'simObj' Object |
| observer-method | Get or Set an Observer Functions to an 'simObj' Object |
| observer-methods | Get or Set an Observer Functions to an 'simObj' Object |
| observer<- | Get or Set an Observer Functions to an 'simObj' Object |
| observer<--method | Get or Set an Observer Functions to an 'simObj' Object |
| observer<--methods | Get or Set an Observer Functions to an 'simObj' Object |
| odeModel | Generating-functions (Constructors) to Create Objects of Classes 'odeModel', 'rwalkModel' and 'gridModel'. |
| odeModel-class | Simulation of Ecological (and Other) Dynamic Systems |
| out | Accessor Functions for 'simObj' Objects |
| out-method | Accessor Functions for 'simObj' Objects |
| out-methods | Accessor Functions for 'simObj' Objects |
| out<- | Accessor Functions for 'simObj' Objects |
| out<--method | Accessor Functions for 'simObj' Objects |
| out<--methods | Accessor Functions for 'simObj' Objects |
-- P --
| p.constrain | Transform Data Between Unconstrained and Box-constrained Scale |
| p.unconstrain | Transform Data Between Unconstrained and Box-constrained Scale |
| parms | Accessor Functions for 'simObj' Objects |
| parms-method | Accessor Functions for 'simObj' Objects |
| parms-methods | Accessor Functions for 'simObj' Objects |
| parms<- | Accessor Functions for 'simObj' Objects |
| parms<--method | Accessor Functions for 'simObj' Objects |
| parms<--methods | Accessor Functions for 'simObj' Objects |
| pcu | Generate Plackett Bivariate Random Numbers |
| pcuseries | Generate Plackett Bivariate Random Numbers |
| peaks | Find Peaks Within xy-Data |
| plot-method | Methods for Function plot in Package 'simecol' |
| plot-methods | Methods for Function plot in Package 'simecol' |
| print-method | Methods for Function 'print' in Package 'simecol' |
| print-methods | Methods for Function 'print' in Package 'simecol' |
-- R --
| rho2alpha | Generate Plackett Bivariate Random Numbers |
| rwalkModel | Generating-functions (Constructors) to Create Objects of Classes 'odeModel', 'rwalkModel' and 'gridModel'. |
| rwalkModel-class | Simulation of Ecological (and Other) Dynamic Systems |
-- S --
| sEdit | Simple editing |
| seedfill | Color Fill Algorithm |
| show-method | Methods for Function 'print' in Package 'simecol' |
| sim | Simulation of 'simObj' model objects |
| sim-method | Simulation of 'simObj' model objects |
| sim-methods | Simulation of 'simObj' model objects |
| simecol | Simulation of Ecological (and Other) Dynamic Systems |
| simObj | Simulation of Ecological (and Other) Dynamic Systems |
| simObj-class | Simulation of Ecological (and Other) Dynamic Systems |
| solver | Accessor Functions for 'simObj' Objects |
| solver-method | Accessor Functions for 'simObj' Objects |
| solver-methods | Accessor Functions for 'simObj' Objects |
| solver<- | Accessor Functions for 'simObj' Objects |
| solver<--method | Accessor Functions for 'simObj' Objects |
| solver<--methods | Accessor Functions for 'simObj' Objects |
| ssqOdeModel | Sum of Squares Between odeModel and Data |
| summary-method | Show Results of Model Fits |
-- T --
| times | Accessor Functions for 'simObj' Objects |
| times-method | Accessor Functions for 'simObj' Objects |
| times-methods | Accessor Functions for 'simObj' Objects |
| times<- | Accessor Functions for 'simObj' Objects |
| times<--method | Accessor Functions for 'simObj' Objects |
| times<--methods | Accessor Functions for 'simObj' Objects |
-- U --
| upca | The Uniform Period Chaotic Amplitude Model |
-- misc --
| $ | Show Results of Model Fits |
| $-method | Show Results of Model Fits |
| [ | Show Results of Model Fits |
| [-method | Show Results of Model Fits |
| [[ | Show Results of Model Fits |
| [[-method | Show Results of Model Fits |