Talking to 'Docker' and 'Singularity' Containers


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Documentation for package ‘babelwhale’ version 1.0.1

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babelwhale-package Talking to both Docker and Singularity containers from R
babelwhale Talking to both Docker and Singularity containers from R
copy_file Copy a file from a container to the host system
create_config Backend configuration for containerisation
create_docker_config Backend configuration for containerisation
create_singularity_config Backend configuration for containerisation
get_default_config Backend configuration for containerisation
list_docker_images List docker containers
pull_container Pull a container from dockerhub
read_file Read a file from a container
run Run a containerised command, and wait until finished
set_default_config Backend configuration for containerisation
singularity_image_path Determine the cached path of singularity images
test_docker_installation Tests whether docker is correctly installed and available
test_singularity_installation Tests whether singularity is correctly installed and available