babelwhale |
Talking to both Docker and Singularity containers from R |
copy_file |
Copy a file from a container to the host system |
create_config |
Backend configuration for containerisation |
create_docker_config |
Backend configuration for containerisation |
create_singularity_config |
Backend configuration for containerisation |
get_default_config |
Backend configuration for containerisation |
list_docker_images |
List docker containers |
pull_container |
Pull a container from dockerhub |
read_file |
Read a file from a container |
run |
Run a containerised command, and wait until finished |
run_auto_mount |
Run a containerised command with automatic mounting of files |
set_default_config |
Backend configuration for containerisation |
singularity_image_path |
Determine the cached path of singularity images |
test_docker_installation |
Tests whether docker is correctly installed and available |
test_singularity_installation |
Tests whether singularity is correctly installed and available |