A 'Shiny' App to Analyze Accelerometer-Measured Daily Physical Behavior Data

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Documentation for package ‘activAnalyzer’ version 2.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

average_results	Average results over valid days
compute_accumulation_metrics	Compute activity accumulation metrics
compute_bmr	Compute Basal Metabolic Rate (BMR)
compute_intensity_distri_metrics	Compute intensity distribution metrics
compute_mets	Compute metabolic equivalent of task (MET) values
compute_mx	Compute MX metric
compute_peak_step_acc	Compute mean step accumulation (per min) from a given number of the best continous or discontinuous minutes
compute_pro_actigraph_score	Compute PROactive monitor-based physical activity score for C-PPAC tool
compute_pro_score_cppac	Provide score for each question of the C-PPAC
compute_pro_score_dppac	Provide score for each question of the D-PPAC
create_fig_mvpa	Create a figure showing the mean daily MVPA time
create_fig_mx_by_day	Create a radar plot for MX metrics relating to each day of the measurement of physical behavior
create_fig_mx_summary	Create a radar plot for the mean or median MX metrics relating to the measurement of physical behavior
create_fig_pal	Create a figure showing the mean daily Physical Activity Level (PAL)
create_fig_ratio_mvpa_sed	Create a figure showing the mean daily MVPA/SED ratio
create_fig_res_by_day	Create a figure with metrics shown for each day
create_fig_sed	Create a figure showing the mean daily sedentary (SED) time
create_fig_steps	Create a figure showing the mean daily step count
create_flextable_summary	Create a formatted table of results
do_all_analyses	Do all analyses at once
get_guidelines_status	Get WHO physical activity guidelines status
get_ig_results	Get intensity gradient values and graphics
get_pal_status	Get FAO physical activity level (PAL) status (http://www.fao.org/3/y5686e/y5686e07.htm#bm07.3)
get_pa_period_info	Get relevant missing physical activity information indicated by the user of the app
get_ratio_mvpa_sed_comment	Get comment about the MVPA/SED ratio
mark_intensity	Add intensity metrics
mark_wear_time	Mark dataset for nonwear/wear time
plot_data	Plot accelerometer data for each day
plot_data_with_intensity	Plot accelerometer data for each day with both nonwear time and physical activity intensity categories
prepare_dataset	Prepare accelerometer data
rasch_transform	Compute Rasch transformation for PROactive scores
read_agd	Read activity counts from an *.agd file
read_agd_raw	Read an *.agd file, with no post-processing
recap_by_day	Summarize results by day
run_app	Run the Shiny Application