aaseq_is_valid |
Check protein sequences for non-standard amino acids |
calculate_features |
Calculate a set of numerical features from protein sequences |
calc_amphiphilicity |
Calculate amphiphilicity (or hydrophobic moment) |
calc_hydrophobicity |
Calculate the hydrophobicity |
calc_mw |
Calculate the molecular weight |
calc_net_charge |
Calculate the net charge |
calc_pI |
Calculate the isoelectric point (pI) |
calc_pseudo_comp |
Calculate the pseudo amino acid composition |
chunk_rows |
Determine row breakpoints for dividing a dataset into chunks for parallel processing |
df_to_faa |
Save a dataframe in FASTA format |
predict_amps |
Predict the antimicrobial peptide probability of a protein |
read_faa |
Read FASTA amino acids file into a dataframe |
remove_nonstandard_aa |
Remove non standard amino acids from protein sequences |
remove_stop_codon |
Remove stop codon at end of sequence |