Viral Variant Location and Diversity
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Documentation for package ‘vivaldi’ version 1.0.1
Help Pages
| add_metadata | add_metadata |
| af_distribution | af_distribution |
| arrange_data | arrange_data |
| dNdS_segment | dNdS_segment |
| example_filtered_SNV_df | Example Dataframe The DF_filt_SNVs dataframe created in the vignette |
| filter_variants | filter_variants |
| merge_replicates | merge_replicates |
| plot_shannon | plot_shannon |
| position_allele_freq | position_allele_freq |
| prepare_annotations | prepare_annotations |
| read_reference_fasta_dna | read_reference_fasta_dna |
| shannon_entropy | shannon_entropy |
| shared_snv_plot | shared_snv_plot |
| shared_snv_table | shared_snv_table |
| snpeff_info | snpeff_info |
| snv_genome | snv_genome |
| snv_location | snv_location |
| snv_segment | snv_segment |
| tally_it | tally_it |
| tstv_plot | tstv_plot |
| tstv_ratio | tstv_ratio |