Genetics and Independence Testing of Mixed Genetic Panels

---

Documentation for package ‘mixIndependR’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

AlleleFreq	Calculate Allele Frequency
AlleleShare	Calculate numbers of sharing alleles each pair at each locus
ComposPare_K	Generate Comparison Observed and Expected No. of Heterozygous Loci.
ComposPare_X	Generate Comparison Observed and Expected No. of Shared Alleles.
counta	Simple count including zero###
DistAlleleShare	Build Expected Distribution of Numbers of Shared Alleles
DistHetero	Build Expected Distribution of Numbers of Heterozygous Loci
Dist_SimuChisq	Build a simulated distribution for Chi-Square
ExpProAlleleShare	Calculate the Expected Probability of 0,1 and 2 Shared Alleles###
FreqAlleleShare	Build Observed Distribution of No. of Shared Alleles
FreqHetero	Build Observed Distribution of No. of Heterozygous loci
GenotypeFreq	Calculate Genotype Frequency###
Heterozygous	Test heterozygosity at each locus
HWE.Chisq	Test the Hardy Weinberg Equilibrium with Chi-square test####
mixexample	Genotype Data from A Selected Mix Panel
mixIndependK	Quick pvalue of total number of heterozygous loci
mixIndependX	Quick pvalue of total number of shared alleles
read_vcf_gt	Import genotype data from vcf files/
RealProAlleleShare	Calculate the Real Probability of 0,1 and 2 Shared Alleles###
RxpHetero	Calculate Real or Expected Average Heterozygosity at each locus
Simulate_DistK	Generate a Bundle of Simulated distributions for No. of heterozygous loci with known heterozygosites
Simulate_DistX	Build a simulated distribution for No. of Shared Alleles
splitGenotype	Split Genotype Table to Duo-Allele Table