Standardized Comparison of Workflows in Mass Spectrometry-Based
Bottom-Up Proteomics
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Documentation for package ‘mpwR’ version 0.1.5
Help Pages
| create_example | Create example data |
| get_CV_LFQ_pep | Peptide-level: Quantitative precision |
| get_CV_LFQ_pg | Proteingroup-level: Quantitative precision |
| get_CV_RT | Retention time precision |
| get_DC_Report | Data Completeness Report |
| get_ID_Report | Report for identifications |
| get_MC_Report | Report about Missed Cleavages |
| get_summary_Report | Summary report |
| get_Upset_list | Generate Upset list |
| load_experimental_design | Load and Prepare the input data with experimental design file |
| plot_CV_density | Density plot |
| plot_DC_barplot | Individual Barplots - Data Completeness |
| plot_DC_stacked_barplot | Summary Barplot - Data Completeness |
| plot_ID_barplot | Individual Barplots - Identifications |
| plot_ID_boxplot | Summary Boxplot - Identifications |
| plot_MC_barplot | Individual Barplots - Missed Cleavages |
| plot_MC_stacked_barplot | Summary Barplot - Missed Cleavages |
| plot_radarchart | Radar chart |
| plot_Upset | Upset Plot |
| prepare_mpwR | Load and Prepare the input data |
| write_experimental_design | Create template for experimental design |
| write_generic_template | Create generic template |