create_example |
Create example data |
get_CV_LFQ_pep |
Peptide-level: Quantitative precision |
get_CV_LFQ_pg |
Proteingroup-level: Quantitative precision |
get_CV_RT |
Retention time precision |
get_DC_Report |
Data Completeness Report |
get_ID_Report |
Report for identifications |
get_MC_Report |
Report about Missed Cleavages |
get_summary_Report |
Summary report |
get_Upset_list |
Generate Upset list |
load_experimental_design |
Load and Prepare the input data with experimental design file |
plot_CV_density |
Density plot |
plot_DC_barplot |
Individual Barplots - Data Completeness |
plot_DC_stacked_barplot |
Summary Barplot - Data Completeness |
plot_ID_barplot |
Individual Barplots - Identifications |
plot_ID_boxplot |
Summary Boxplot - Identifications |
plot_MC_barplot |
Individual Barplots - Missed Cleavages |
plot_MC_stacked_barplot |
Summary Barplot - Missed Cleavages |
plot_radarchart |
Radar chart |
plot_Upset |
Upset Plot |
prepare_mpwR |
Load and Prepare the input data |
write_experimental_design |
Create template for experimental design |
write_generic_template |
Create generic template |