DSAIDE | DSAIDE: A package to learn about Dynamical Systems Approaches to Infectious Disease Epidemiology |

dsaidemenu | The main menu for the DSAIDE package |

flu1918data | 1918 Influenza mortality data |

generate_documentation | A helper function which processes and displays the documentation part for each app |

generate_fctcall | A helper function that produces a call to a simulator function for specific settings |

generate_ggplot | A helper function that takes simulation results and produces ggplot plots |

generate_plotly | A helper function that takes simulation results and produces plotly plots |

generate_shinyinput | A helper function that takes a model and generates shiny UI elements |

generate_text | A helper function that takes result from the simulators and produces text output |

norodata | Cases of norovirus during an outbreak |

run_model | A function that runs an app for specific settings and processes results for plot and text generation |

simulate_Characteristics_of_ID_ode | Characteristics of ID |

simulate_Complex_ID_Control_ode | Complex ID Control |

simulate_directtransmission_ode | Simulation of a compartmental infectious disease transmission model illustrating different types of direct transmission |

simulate_Drug_Resistance_Evolution_stochastic | Drug Resistance Evolution |

simulate_Environmental_Transmission_model_ode | Environmental Transmission model |

simulate_flu_fit | Fitting a SIR-type model to flu data |

simulate_Host_Heterogeneity_Model_ode | Host Heterogeneity Model |

simulate_idcontrolmultigroup_ode | Simulation of a compartmental infectious disease transmission model with 3 types of hosts and intervention |

simulate_idcontrolmultioutbreak_ode | Simulation of a compartmental infectious disease transmission model to study the reproductive number |

simulate_idpatterns_ode | Simulation of a compartmental infectious disease transmission model including seasonality |

simulate_idsurveillance_ode | Simulation of a compartmental infectious disease transmission model illustrating the impact of ID surveillance |

simulate_idvaccine_ode | Simulation of a compartmental infectious disease transmission model to study the reproductive number |

simulate_multipathogen_ode | Simulation of a compartmental infectious disease transmission model with 2 types of pathogens |

simulate_noro_fit | Fitting a simple SIR type model to norovirus outbreak data |

simulate_SEIRSd_model_stochastic | SEIRSd model |

simulate_SIRSd_model_ode | SIRSd model |

simulate_SIRSd_model_stochastic | SIRSd model |

simulate_SIR_modelexploration | Simulation to illustrate parameter scan of the basic SIR model with births and deaths #' |

simulate_SIR_model_discrete | SIR model |

simulate_SIR_model_ode | SIR model |

simulate_SIR_usanalysis | Simulation to illustrate uncertainty and sensitivity analysis |

simulate_Vector_transmission_model_ode | Vector transmission model |