Cancer Rule Set Optimization ('crso')

Documentation for package ‘crso’ version 0.1.1

buildRuleLibrary	Make full rule library of all rules that satisfy minimum coverage threshold.
evaluateListOfIMs	Evaluate list of rule set matrices
getBestRsList	Get list of best rule sets of size K for all K
getCoreK	Determine core K from phase 3 tpl and til
getCoreRS	Get core rules from phase 3 tpl and til
getGCDs	Get Generalized Core Duos
getGCEs	Get Generalized Core Events
getGCRs	Get Generalized Core Rules
getPoolSizes	Get pool sizes for phase 2
getRulesAsStrings	Represent binary rule matrix as strings
makeFilteredImList	Make filtered im list from phase 3 im list
makePhaseOneOrderedRM	Order rules according to phase one importance ranking
makePhaseThreeImList	Make phase 3 im list from phase 2 im list
makePhaseTwoImList	Output list of top rule sets for each k in 1:k.max
makeSubCoreList	Get list of core rules from random subsets of samples
skcm.list	Example data set derived from TCGA skin cutaneous melanoma (SKCM) data.