buildRuleLibrary |
Make full rule library of all rules that satisfy minimum coverage threshold. |
evaluateListOfIMs |
Evaluate list of rule set matrices |
getBestRsList |
Get list of best rule sets of size K for all K |
getCoreK |
Determine core K from phase 3 tpl and til |
getCoreRS |
Get core rules from phase 3 tpl and til |
getGCDs |
Get Generalized Core Duos |
getGCEs |
Get Generalized Core Events |
getGCRs |
Get Generalized Core Rules |
getPoolSizes |
Get pool sizes for phase 2 |
getRulesAsStrings |
Represent binary rule matrix as strings |
makeFilteredImList |
Make filtered im list from phase 3 im list |
makePhaseOneOrderedRM |
Order rules according to phase one importance ranking |
makePhaseThreeImList |
Make phase 3 im list from phase 2 im list |
makePhaseTwoImList |
Output list of top rule sets for each k in 1:k.max |
makeSubCoreList |
Get list of core rules from random subsets of samples |
skcm.list |
Example data set derived from TCGA skin cutaneous melanoma (SKCM) data. |