carnivora |
125 genes trees for 53 carnivora species |
detect.outliers |
Detection of outliers in 1D and 2D data |
detect.outliers.array |
Detection of outliers in 1D and 2D data |
Dist2WR |
Compute gene x species matrix from the result of Distatis |
DistatisFast |
Fast implementation the multivariate analysis method Distatis |
impMean |
Imputation of missing values in a collection of matrices |
medcouple |
A robust measure of skewness for univariate data |
normalize |
Median normalization of 2D matrix by row or by colomn |
phylter |
Filter phylogenomics datasets |
plot.phylter |
Plot phylter objects |
plot2WR |
Plot phylter objects |
plotDispersion |
Plot phylter objects |
plotopti |
Plot phylter objects |
plotRV |
Plot phylter objects |
PreparePhylterData |
Prepare data for phylter analysis |
print.phylter |
Print phylter objects |
print.phylterfinal |
print objects of class phylterfinal |
print.phylterinitial |
print objects of class phylterinitial |
print.summary.phylter |
print summary of phylter objects |
rename.genes |
Name or rename a list of gene trees or matrices |
simtrees |
Simplistic simulation of gene trees with outliers |
summary.phylter |
Get summary for phylter objects |
trees2matrices |
Convert phylogenetic trees to distance matrices |
write.phylter |
Write summary of phyter analysis to file(s) |