A Data Manipulation and Analysis Package for Calcium Indicator
Data
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Documentation for package ‘GCalcium’ version 1.0.0
Help Pages
| averaged_trials | Averages signals across trials |
| avg_curve_slope | Get average curve slopes |
| between_trial_change | Compare mean activity between trials |
| centered_AUC | Compute centered area under curve |
| consecutive_trial_change | Compare mean activity in consecutive trials |
| find_peaks | Get peaks/valleys in waveform data |
| format_data | Reformat and label data into GCalcium format |
| GCaMP | Pre-filtered GCaMP calcium activity waveforms |
| inflect_points | Find inflection pooints |
| inflect_points_df | Find inflection points and curve numbers |
| moving_window | Summarize data within windows of time |
| perc_baseline | Find the percent change from baseline |
| plot_trials | Plot specified trials |
| within_trial_change | Get mean activity change within a trial |
| z_score | Transform values into z scores |