and |
AND module server logic |
andUI |
AND module UI representation |
categoricalPalettes |
Function to generate categorical (qualitative) color palettes |
Clarion |
Clarion R6-class definition |
colorPicker |
colorPicker module server logic |
colorPickerUI |
colorPicker module UI representation |
columnSelector |
columnSelector module server logic |
columnSelectorUI |
columnSelector module UI representation |
create_geneview |
Method for geneView creation |
create_heatmap |
Method for heatmap creation |
create_pca |
Method for pca creation. |
create_scatterplot |
Method for scatter plot creation |
divergingPalettes |
Function to generate diverging (two-sided) color palettes (e.g. for log2fc, zscore) |
download |
Function used for downloading. Creates a zip container containing plot in png, pdf and user input in json format. Use inside 'downloadHandler' content function. |
equalize |
Method to get equalized min/max values from vector |
featureSelector |
featureSelector module server logic |
featureSelectorGuide |
featureSelector module guide |
featureSelectorUI |
featureSelector module UI representation |
forceArgs |
Force evaluation of the parent function's arguments. |
geneView |
geneView's module server logic |
geneViewGuide |
geneView module guide |
geneViewUI |
geneView's module UI representation |
global_cor_heatmap |
global correlation heatmap module server logic |
global_cor_heatmapUI |
global correlation heatmap module UI representation |
global_cor_heatmap_guide |
global correlation heatmap module guide |
heatmap |
heatmap module server logic |
heatmapGuide |
heatmap module guide |
heatmapUI |
heatmap module UI representation |
install_app |
Download and install Wilson Apps |
label |
label module server logic |
labelUI |
label module UI representation |
limit |
limit module server logic |
limitUI |
limit module UI representation |
log_message |
logger message convenience function |
marker |
marker module server logic |
markerUI |
marker module UI representation |
orNumeric |
orNumeric module server logic |
orNumericUI |
orNumeric module UI representation |
orTextual |
orTextual module server logic |
orTextualUI |
orTextual module UI representation |
parser |
Method to parse input file. |
parse_MaxQuant |
Converting MaxQuant Output file proteinGroups.txt to CLARION format by creating a headline of metadata for each column |
pca |
pca module server logic |
pcaGuide |
pca module guide |
pcaUI |
pca module UI representation |
release_questions |
Defines additional questions asked before CRAN submission. DO NOT EXPORT! |
scatterPlot |
scatterPlot module server logic |
scatterPlotGuide |
scatterPlot module guide |
scatterPlotUI |
scatterPlot module UI representation |
searchData |
Function to search data for selection |
sequentialPalettes |
Function to generate sequential (one-sided) color palettes (e.g. for expression, enrichment) |
set_logger |
set a log4r logger used within the package |
tobias_parser |
TOBIAS TFBS table to clarion parser |
transformation |
transformation module server logic |
transformationUI |
transformation module UI representation |