Web-Based Interactive Omics Visualization

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Documentation for package ‘wilson’ version 2.4.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

and	AND module server logic
andUI	AND module UI representation
categoricalPalettes	Function to generate categorical (qualitative) color palettes
Clarion	Clarion R6-class definition
colorPicker	colorPicker module server logic
colorPickerUI	colorPicker module UI representation
columnSelector	columnSelector module server logic
columnSelectorUI	columnSelector module UI representation
create_geneview	Method for geneView creation
create_heatmap	Method for heatmap creation
create_pca	Method for pca creation.
create_scatterplot	Method for scatter plot creation
divergingPalettes	Function to generate diverging (two-sided) color palettes (e.g. for log2fc, zscore)
download	Function used for downloading. Creates a zip container containing plot in png, pdf and user input in json format. Use inside 'downloadHandler' content function.
equalize	Method to get equalized min/max values from vector
featureSelector	featureSelector module server logic
featureSelectorGuide	featureSelector module guide
featureSelectorUI	featureSelector module UI representation
forceArgs	Force evaluation of the parent function's arguments.
geneView	geneView's module server logic
geneViewGuide	geneView module guide
geneViewUI	geneView's module UI representation
global_cor_heatmap	global correlation heatmap module server logic
global_cor_heatmapUI	global correlation heatmap module UI representation
global_cor_heatmap_guide	global correlation heatmap module guide
heatmap	heatmap module server logic
heatmapGuide	heatmap module guide
heatmapUI	heatmap module UI representation
install_app	Download and install Wilson Apps
label	label module server logic
labelUI	label module UI representation
limit	limit module server logic
limitUI	limit module UI representation
log_message	logger message convenience function
marker	marker module server logic
markerUI	marker module UI representation
orNumeric	orNumeric module server logic
orNumericUI	orNumeric module UI representation
orTextual	orTextual module server logic
orTextualUI	orTextual module UI representation
parser	Method to parse input file.
parse_MaxQuant	Converting MaxQuant Output file proteinGroups.txt to CLARION format by creating a headline of metadata for each column
pca	pca module server logic
pcaGuide	pca module guide
pcaUI	pca module UI representation
release_questions	Defines additional questions asked before CRAN submission. DO NOT EXPORT!
scatterPlot	scatterPlot module server logic
scatterPlotGuide	scatterPlot module guide
scatterPlotUI	scatterPlot module UI representation
searchData	Function to search data for selection
sequentialPalettes	Function to generate sequential (one-sided) color palettes (e.g. for expression, enrichment)
set_logger	set a log4r logger used within the package
tobias_parser	TOBIAS TFBS table to clarion parser
transformation	transformation module server logic
transformationUI	transformation module UI representation