signalHsmm-package |
signalHsmm - prediction of signal peptides |
aaaggregation |
Reduced amino acid alphabet |
add_k_mer_state |
Adds k-mer hidden state to signalHsmm model |
benchmark_dat |
Benchmark data set for signalHsmm |
duration_viterbi |
Compute most probable path with extended Viterbi algorithm. |
find_nhc |
Localize n-, h- and c-region in signal peptide |
gui_signalHsmm |
GUI for signalHsmm |
hsmm_pred |
hsmm_pred class |
hsmm_pred_list |
hsmm_pred_list class |
is_protein |
Protein test |
plot.hsmm_pred |
Plot single signalHsmm prediction |
pred2df |
Convert list of signalHsmm predictions |
predict.sighsmm_model |
Predict sighsmm_model object |
read_txt |
Read sequences from .txt file |
read_uniprot |
Read data from UniProt database |
run_signalHsmm |
Predict presence of signal peptide in protein |
signalHsmm |
signalHsmm - prediction of signal peptides |
summary.hsmm_pred |
Summarize single signalHsmm prediction |
summary.hsmm_pred_list |
Summarize list of signalHsmm predictions |
train_hsmm |
Train sighsmm_model object |