Predict Presence of Signal Peptides

Documentation for package ‘signalHsmm’ version 1.5

signalHsmm-package	signalHsmm - prediction of signal peptides
aaaggregation	Reduced amino acid alphabet
add_k_mer_state	Adds k-mer hidden state to signalHsmm model
benchmark_dat	Benchmark data set for signalHsmm
duration_viterbi	Compute most probable path with extended Viterbi algorithm.
find_nhc	Localize n-, h- and c-region in signal peptide
gui_signalHsmm	GUI for signalHsmm
hsmm_pred	hsmm_pred class
hsmm_pred_list	hsmm_pred_list class
is_protein	Protein test
plot.hsmm_pred	Plot single signalHsmm prediction
pred2df	Convert list of signalHsmm predictions
predict.sighsmm_model	Predict sighsmm_model object
read_txt	Read sequences from .txt file
read_uniprot	Read data from UniProt database
run_signalHsmm	Predict presence of signal peptide in protein
signalHsmm	signalHsmm - prediction of signal peptides
summary.hsmm_pred	Summarize single signalHsmm prediction
summary.hsmm_pred_list	Summarize list of signalHsmm predictions
train_hsmm	Train sighsmm_model object