Phased or Unphased Linkage Disequilibrium

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Documentation for package ‘pould’ version 1.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cALD	Calculation of the D', Wn, and conditional Asymmetric LD Measures
drb1.dqb1.demo	Example HLA Genotype Data for DRB1 and DQB1
extractLoci	Extract Locus Information from Supplied Haplotype Data
hla.hap.demo	Example Six-Locus HLA Haplotype Data in GL String Format
LD.heat.map	Generates heat-maps for four linkage disequilibrium (LD) values (D', Wn, WLoc1/Loc2 and WLoc2/Loc1) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().
LD.sign.test	Perform the sign test on paired LD values for phased and unphased haplotypes
LDWrap	Parser for CSV-formatted GL String Haplotype Data
parseGenotypes	Reformat columnnar genotype data to GL String format
trimAlleles	Truncate allele names in haplotypes to the specified number of fields.
writeVector	Exporting Haplotype Vectors