Community Ecology Analyses


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Documentation for package ‘CommEcol’ version 1.7.1

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CommEcol-package Community Ecology Analyses
autosimi Autosimilarity curve of species community data
betaRegDisp Beta diversity metrics between sites in a moving window along environmental gradients
CommEcol Community Ecology Analyses
compas Simulation of species community data along gradients
dis.chao Chao et al. dissimilarity indices
dis.goodall Goodall dissimilarity index
dis.nness NNESS and NESS dissimilarity indices
dis.nness.find.m NNESS and NESS dissimilarity indices
japi Macroinvertebrate morphospecies living on stones of a stream in southeast Brazil
part.m.tree Partition of multi-sample dissimilarity indices using phylogenetic/functional data
part.p.tree Partition of pair-wise dissimilarity indices using phylogenetic/functional data
select.window Select cells inside a defined window of a gridded dataset
sites4.6 Artificial dataset containing 4 samples [rows] and 6 species[columns].
sites5.6 Artificial dataset containing 5 samples [rows] and 6 species[columns].
sites6.6 Artificial dataset containing 6 samples [rows] and 6 species[columns].
stairs6 Example of phylogenetic tree containing 6 species.
standExtent Standardization of spatial extent for two metacommunities by subsampling
tree6 Example of phylogenetic tree containing 6 species.
treeNodf Tree-like Nestedness of Ecological Metacommunities
treeNodfTest Tree-like Nestedness of Ecological Metacommunities