Perform Logistic Normal Multinomial Clustering for Microbiome Compositional Data

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Documentation for package ‘lnmCluster’ version 0.3.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

initial_variational_gaussian	Gives default initial guesses for logistic-normal multinomial biclustering algorithm.
initial_variational_lasso	Gives default initial guesses for penalized logistic-normal multinomial Factor analyzer algorithm.
initial_variational_PGMM	Gives default initial guesses for logistic-normal multinomial Factor analyzer algorithm.
lnmbiclust	Logistic Normal Multinomial Biclustering algorithm
lnmfa	Logistic Normal Multinomial factor analyzer algorithm
Mico_bi_jensens	run main microbiome bicluster algorithm.
Mico_bi_lasso	Penalized Logistic Normal Multinomial factor analyzer main estimation process
Mico_bi_PGMM	run main microbiome Factor Analyzer algorithm.
model_selection	Model selections for 'lnmbicluster'
model_selection_lasso	Model selections for 'plnmfa'
model_selection_PGMM	Model selections for 'lnmfa'
plnmfa	Penalized Logistic Normal Multinomial factor analyzer algorithm