Generalized Convergence Diagnostics for Difficult MCMC Algorithms

Documentation for package ‘genMCMCDiag’ version 0.2.2

bnMCMCResults	Results from a Bayesian Network MCMC algorithm on simulated data
dpmmDistance	DPMM Distance
estimateTsTime	Uses generic formulas and rough time estimate to estimate time it will take to evaluate the TS algorithm on a set of unique draws with the tsTransform function.
eucDist	Euclidean Distance
fitNN	Helpful mini function to fit the nearest neighbor (NN) algorithm given a set and defined distance
genDiagnostic	Generate Generalized Diagnostics for Markov Chain Monte Carlo Draws
hammingDist	Hamming Distance
lanfearTransform	Transforms a list of MCMC chains into a list of data.frames using the Lanfear transformation
listLabels	Function to assign character labels to all unique objects in a list
partitionDist	Partition Distance
print.mcmcDiag	Print method for mcmcDiag objects
sess	Calculate the effective sample size, per chain and in total, of draws from an MCMC algorithm
sgelmanRubin	Calculate the Gelman-Rubin diagnostic of draws from an MCMC algorithm
standardTransform	Transforms a list of MCMC chains into a list of dataframes with no modifications to values
straceplot	Generate a traceplot of draws from a multi-chain MCMC
tsTransform	Transforms a list of MCMC chains into a list of data.frames using the TS transformation
uniMCMCResults	Results from a univariate MCMC algorithm on a simulated posterior