annot_all_chars |
Annotate all character statements with ontology terms |
annot_char_grep |
Annotate a character statement with ontology terms |
chars_per_term |
Get number of chracters per each ontology term |
edges2list |
Convert edge matrix to list |
exclude_terms |
Ontology terms to exclude for sunburst plot |
export_annotations |
Export annotation data |
export_cytoscape |
Export to Cytoscape format |
get_ancestors_chars |
Get ancestal ontology terms for a set of characters |
get_descendants_chars |
Get characters that descendants of selected ontology term |
get_onto_id |
Get IDs for ontology names |
get_onto_name |
Get names for ontology IDs |
HAO |
Hymenoptera Anatomy Ontology (HAO) |
list2edges |
Convert list to edge matrix |
make_shiny_in |
Make an ontology object for visualization |
onto_process |
Shortcut to process characters and ontology |
paths_sunburst |
Return ontology paths for characters |
runOntoFast |
Run ontoFAST interactively |
Scarab |
A modified Hymenoptera Anatomy Ontology (HAO) to accommodate anatomy of dung beetles |
Sharkey_2011 |
Hymenoptera character statements |
Sharkey_2011_annot |
Hymenoptera characters annotated with ontology terms |
syn_extract |
Link synonyms with ontology terms |
table2list |
Converts a table to list |
Tarasov_2017_annot |
Dung beetle characters annotated with ontology terms |