SHAP Plots for 'XGBoost'

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Documentation for package ‘SHAPforxgboost’ version 0.1.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

dataXY_df	Terra satellite data (X,Y) for running the xgboost model .
label.feature	Modify labels for features under plotting
labels_within_package	labels_within_package: Some labels package auther defined to make his plot, mainly serve the paper publication.
new_labels	new_labels: a place holder default to NULL.
plot.label	Internal-function to revise axis label for each feature
scatter.plot.diagonal	Make customized scatter plot with diagonal line and R2 printed.
scatter.plot.simple	Simple scatter plot, adding marginal histogram by default.
shap.importance	Variable importance as measured by mean absolute SHAP value.
shap.plot.dependence	SHAP dependence plot and interaction plot, optional to be colored by a selected feature
shap.plot.force_plot	Make the SHAP force plot
shap.plot.force_plot_bygroup	Make the stack plot, optional to zoom in at certain x or certain cluster
shap.plot.summary	SHAP summary plot core function using the long format SHAP values
shap.plot.summary.wrap1	A wrapped function to make summary plot from model object and predictors
shap.plot.summary.wrap2	A wrapped function to make summary plot from given SHAP values matrix
shap.prep	Prepare SHAP values into long format for plotting
shap.prep.interaction	Prepare the interaction SHAP values from predict.xgb.Booster
shap.prep.stack.data	Prepare data for SHAP force plot (stack plot)
shap.values	Get SHAP scores from a trained XGBoost or LightGBM model
shap_int_iris	The interaction effect SHAP values example using iris dataset.
shap_long_iris	The long-format SHAP values example using iris dataset.
shap_score	SHAP values example from dataXY_df .
shap_values_iris	SHAP values example using iris dataset.