Common Computational Operations Working with RefSeq Entries (GenBank)

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Documentation for package ‘refseqR’ version 1.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

refseqR-package	refseqR: Common computational operations working with RefSeq
extract_from_xm	Extract some features from an XM accession
refseqR	refseqR: Common computational operations working with RefSeq
refseq_AAseq	Extract the amino acid sequence into a Biostrings object
refseq_AA_length	Get the amino acid length from a protein accession
refseq_AA_mol_wt	Extract the molecular weight from a protein accession
refseq_CDScoords	Extract the coding sequences (CDS) coordinates from a transcript accession
refseq_CDSseq	Extract the CDS nucleotide sequence into a Biostrings object
refseq_description	Get the sequence Description
refseq_fromGene	Get the mRNA or protein accession
refseq_GeneID	Get the GeneID
refseq_mRNA2protein	Get the XP accession from XM accession
refseq_mRNAfeat	Get mRNA features
refseq_protein2mRNA	Get the transcript accession from the protein accession