Integration and Analysis of Chromatin Loop Data

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Documentation for package ‘LoopRig’ version 0.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ConsensusLoops	Subset an object of class LoopRanges using consensus options
DropLoops	Drop loops from _LoopRanges_ objects using anchor and loop sizes
ElementsToRanges	Create a list of ranges objects from element data
ExportBED	Export a LoopRanges or _italics_ElementRanges object to a BED/BEDPE file
LinkedElements	Determines elements linked by loop anchors
LoopsToRanges	Create a list of ranges objects from looping data
ScaffoldElements	Finds elements within loops scaffolded by another set of elements
StackedElements	Finds elements stacked atop loop anchors