Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts


[Up] [Top]

Documentation for package ‘AmpliconDuo’ version 1.1.1

Help Pages

AmpliconDuo-package Statistical Analysis Of Amplicon Data Of The Same Sample To Identify Spurious Amplicons
accepted.amplicons List Of Amplicon Indices That Passed Filter Criteria
AmpliconDuo Statistical Analysis Of Amplicon Data Of The Same Sample To Identify Spurious Amplicons
ampliconduo Apply Fisher's Exact Tests To Two Amplicon Frequency Sets Of The Same Sample
ampliconfreqs SSU Amplicon Frequencies Of Different Sampling Sites (Short Version)
ampliconfreqs.long SSU Amplicon Frequencies Of Different Sampling Sites
amplicons Example List of Ampliconduo Data Frames
discordance.delta Measure Of Discordance Between Two Amplicon Data Sets
filter.ampliconduo AmpliconDuo Amplicon Filter
filter.ampliconduo.set AmpliconDuo List Amplicon Filter
plotAmpliconduo Frequeny-Frequency Plot Focusing On Significant Deviations In Amplicon Occurences
plotAmpliconduo.set Frequeny-Frequency Plot Arrangement Focusing On Significant Deviations In Amplicon Occurences
plotORdensity Probability Density Plot Of Odds Ratios
site.f Sampling Site Short Names