aggregate_feature_importances |
Aggregate Feature Importances |
AnnotatedGeneLists-class |
AnnotatedGeneLists class |
annotate_gene_lists |
Convert and Annotate Gene Lists |
calculate_mean_cv_scores |
Calculate Mean Cross-Validation Scores for Various Feature Selection Methods |
calculate_overlap_coefficients |
Calculate Overlap and Similarity Coefficients between Feature Lists |
calculate_permutation_feature_importance |
Calculate Permutation Feature Importance |
check_python_modules_available |
Check Python Module Availability for Examples |
compute_GO_child_term_metrics |
Retrieve and Plot the Offspring Nodes of GO Terms |
configure_environment |
Configure Python Environment for GeneSelectR |
create_conda_env |
Create a specific Conda environment |
create_pipelines |
Create Pipelines |
create_test_metrics_df |
Create a Dataframe of Test Metrics |
define_sklearn_modules |
Define Python modules and scikit-learn submodules |
enable_multiprocess |
Enable Multiprocessing in Python Environment |
evaluate_test_metrics |
Evaluate Test Metrics for a Grid Search Model |
GeneList-class |
GeneList class |
GeneSelectR |
Gene Selection and Evaluation with GeneSelectR |
get_feature_importances |
Get Feature Importances |
GO_enrichment_analysis |
Perform gene set enrichment analysis using clusterProfiler |
import_python_packages |
Import Python Libraries |
install_python_packages |
Install necessary Python packages in a specific Conda environment |
perform_grid_search |
Perform Grid Search or Random Search for Hyperparameter Tuning |
PipelineResults-class |
PipelineResults class |
pipeline_to_list |
Convert Scikit-learn Pipeline to Named List |
plot_feature_importance |
Plot Feature Importance |
plot_metrics |
Plot Performance Metrics |
plot_overlap_heatmaps |
Generate Heatmaps to Visualize Overlap and Similarity Coefficients between Feature Lists |
plot_upset |
Plot Feature Overlaps Using UpSet Plots |
run_simplify_enrichment |
Run simplifyGOFromMultipleLists with specified measure and method |
set_default_fs_methods |
Set Default Feature Selection Methods |
set_default_param_grids |
Set Default Parameter Grids for Feature Selection |
set_reticulate_python |
Set RETICULATE_PYTHON for the Current Session |
skip_if_no_modules |
Check if Python Modules are Available |
split_data |
Split Data into Training and Test Sets |
steps_to_tuples |
Convert Steps to Tuples |