Interface to the Global Biodiversity Information Facility API
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Documentation for package ‘rgbif’ version 3.8.0
Help Pages
| rgbif-package | Interface to the Global Biodiversity Information Facility API. |
-- A --
| as.download | Import a downloaded file from GBIF. |
| as.download.character | Import a downloaded file from GBIF. |
| as.download.download | Import a downloaded file from GBIF. |
-- C --
| check_wkt | Check input WKT |
| count_facet | Facetted count occurrence search. |
-- D --
| dataset | Search for more obscure dataset metadata. |
| datasets | Search for datasets and dataset metadata. |
| dataset_comment | Get dataset metadata using a datasetkey |
| dataset_constituents | Get dataset metadata using a datasetkey |
| dataset_contact | Get dataset metadata using a datasetkey |
| dataset_doi | Get a GBIF dataset from a doi |
| dataset_duplicate | List datasets that are deleted or have no endpoint. |
| dataset_endpoint | Get dataset metadata using a datasetkey |
| dataset_export | Search for dataset metadata. |
| dataset_get | Get dataset metadata using a datasetkey |
| dataset_gridded | Check if a dataset is gridded |
| dataset_identifier | Get dataset metadata using a datasetkey |
| dataset_list_funs | List datasets that are deleted or have no endpoint. |
| dataset_machinetag | Get dataset metadata using a datasetkey |
| dataset_metrics | Get dataset metadata using a datasetkey |
| dataset_networks | Get dataset metadata using a datasetkey |
| dataset_noendpoint | List datasets that are deleted or have no endpoint. |
| dataset_process | Get dataset metadata using a datasetkey |
| dataset_search | Search for dataset metadata. |
| dataset_suggest | Search for dataset metadata. |
| dataset_tag | Get dataset metadata using a datasetkey |
| dataset_uuid_funs | Get dataset metadata using a datasetkey |
| derived_dataset | Register a derived dataset for citation. |
| derived_dataset_prep | Register a derived dataset for citation. |
| downloads | Downloads interface |
| download_predicate_dsl | Download predicate DSL (domain specific language) |
-- E --
| elevation | Get elevation for lat/long points from a data.frame or list of points. |
| enumeration | Enumerations. |
| enumeration_country | Enumerations. |
-- G --
| gbif_bbox2wkt | Convert a bounding box to a Well Known Text polygon, and a WKT to a bounding box |
| gbif_citation | Get citation for datasets used |
| gbif_geocode | Geocode lat-lon point(s) with GBIF's set of geo-polygons (experimental) |
| gbif_issues | List all GBIF issues and their codes. |
| gbif_issues_lookup | Lookup issue definitions and short codes |
| gbif_names | View highlighted terms in name results from GBIF. |
| gbif_oai | GBIF registry data via OAI-PMH |
| gbif_oai_get_records | GBIF registry data via OAI-PMH |
| gbif_oai_identify | GBIF registry data via OAI-PMH |
| gbif_oai_list_identifiers | GBIF registry data via OAI-PMH |
| gbif_oai_list_metadataformats | GBIF registry data via OAI-PMH |
| gbif_oai_list_records | GBIF registry data via OAI-PMH |
| gbif_oai_list_sets | GBIF registry data via OAI-PMH |
| gbif_photos | View photos from GBIF. |
| gbif_wkt2bbox | Convert a bounding box to a Well Known Text polygon, and a WKT to a bounding box |
-- I --
| installations | Installations metadata. |
-- L --
| lit_count | Search for literature that cites GBIF mediated data |
| lit_search | Search for literature that cites GBIF mediated data |
-- M --
| map_fetch | Fetch maps of GBIF occurrences |
| mvt_fetch | Fetch Map Vector Tiles (MVT) |
-- N --
| name_backbone | Lookup names in the GBIF backbone taxonomy. |
| name_backbone_checklist | Lookup names in the GBIF backbone taxonomy in a checklist. |
| name_backbone_verbose | Lookup names in the GBIF backbone taxonomy. |
| name_issues | Parse and examine further GBIF name issues on a dataset. |
| name_lookup | Lookup names in all taxonomies in GBIF. |
| name_parse | Parse taxon names using the GBIF name parser. |
| name_suggest | Suggest up to 20 name usages. |
| name_usage | Lookup details for specific names in all taxonomies in GBIF. |
| network | Get data about GBIF networks |
| networks | Networks metadata. |
| network_constituents | Get data about GBIF networks |
| nodes | Nodes metadata. |
-- O --
| occ_count | Get number of occurrence records. |
| occ_count_ | Get quick pre-computed occurrence counts of a limited number of dimensions. |
| occ_count_basis_of_record | Get quick pre-computed occurrence counts of a limited number of dimensions. |
| occ_count_country | Get quick pre-computed occurrence counts of a limited number of dimensions. |
| occ_count_pub_country | Get quick pre-computed occurrence counts of a limited number of dimensions. |
| occ_count_year | Get quick pre-computed occurrence counts of a limited number of dimensions. |
| occ_data | Legacy alternative to occ_search |
| occ_download | Spin up a download request for GBIF occurrence data. |
| occ_download_cached | Check for downloads already in your GBIF account |
| occ_download_cancel | Cancel a download creation process. |
| occ_download_cancel_staged | Cancel a download creation process. |
| occ_download_datasets | List datasets for a download |
| occ_download_dataset_activity | Lists the downloads activity of a dataset |
| occ_download_describe | Describes the fields available in GBIF downloads |
| occ_download_get | Get a download from GBIF. |
| occ_download_import | Import a downloaded file from GBIF. |
| occ_download_list | Lists the downloads created by a user. |
| occ_download_meta | Retrieves the occurrence download metadata by its unique key. |
| occ_download_prep | Spin up a download request for GBIF occurrence data. |
| occ_download_queue | Download requests in a queue |
| occ_download_wait | Wait for an occurrence download to be done |
| occ_facet | Facet GBIF occurrences |
| occ_get | Get data for GBIF occurrences by occurrence key |
| occ_get_verbatim | Get data for GBIF occurrences by occurrence key |
| occ_issues | Parse and examine further GBIF occurrence issues on a dataset. |
| occ_metadata | Search for catalog numbers, collection codes, collector names, and institution codes. |
| occ_search | Search for GBIF occurrences |
| organizations | Organizations metadata. |
-- P --
| parsenames | Parse taxon names using the GBIF name parser. |
| pred | Download predicate DSL (domain specific language) |
| pred_and | Download predicate DSL (domain specific language) |
| pred_default | Download predicate DSL (domain specific language) |
| pred_gt | Download predicate DSL (domain specific language) |
| pred_gte | Download predicate DSL (domain specific language) |
| pred_in | Download predicate DSL (domain specific language) |
| pred_isnull | Download predicate DSL (domain specific language) |
| pred_like | Download predicate DSL (domain specific language) |
| pred_lt | Download predicate DSL (domain specific language) |
| pred_lte | Download predicate DSL (domain specific language) |
| pred_not | Download predicate DSL (domain specific language) |
| pred_notnull | Download predicate DSL (domain specific language) |
| pred_or | Download predicate DSL (domain specific language) |
| pred_within | Download predicate DSL (domain specific language) |
-- R --
| rgbif | Interface to the Global Biodiversity Information Facility API. |
| rgbif-defunct | Defunct functions in rgbif |
| rgb_country_codes | Look up 2 character ISO country codes |
-- T --
| taxrank | Get the possible values to be used for (taxonomic) rank arguments in GBIF API methods. |
-- W --
| wkt_parse | parse wkt into smaller bits |