A C D E F G H K L M N P R S T V misc
chevron-package | 'chevron' package |
ael01_nollt | 'AEL01_NOLLT' Listing 1 (Default) Glossary of Preferred Terms and Investigator-Specified Terms. |
ael01_nollt_main | 'AEL01_NOLLT' Listing 1 (Default) Glossary of Preferred Terms and Investigator-Specified Terms. |
ael01_nollt_post | 'AEL01_NOLLT' Listing 1 (Default) Glossary of Preferred Terms and Investigator-Specified Terms. |
ael01_nollt_pre | 'AEL01_NOLLT' Listing 1 (Default) Glossary of Preferred Terms and Investigator-Specified Terms. |
aet01 | 'AET01' Table 1 (Default) Overview of Deaths and Adverse Events Summary Table 1. |
aet01_aesi | 'AET01_AESI' Table 1 (Default) Adverse Event of Special Interest Summary Table. |
aet01_aesi_main | 'AET01_AESI' Table 1 (Default) Adverse Event of Special Interest Summary Table. |
aet01_aesi_post | 'AET01_AESI' Table 1 (Default) Adverse Event of Special Interest Summary Table. |
aet01_aesi_pre | 'AET01_AESI' Table 1 (Default) Adverse Event of Special Interest Summary Table. |
aet01_main | 'AET01' Table 1 (Default) Overview of Deaths and Adverse Events Summary Table 1. |
aet01_post | 'AET01' Table 1 (Default) Overview of Deaths and Adverse Events Summary Table 1. |
aet01_pre | 'AET01' Table 1 (Default) Overview of Deaths and Adverse Events Summary Table 1. |
aet02 | 'AET02' Table 1 (Default) Adverse Events by System Organ Class and Preferred Term Table 1. |
aet02_label | 'AET02' Table 1 (Default) Adverse Events by System Organ Class and Preferred Term Table 1. |
aet02_main | 'AET02' Table 1 (Default) Adverse Events by System Organ Class and Preferred Term Table 1. |
aet02_post | 'AET02' Table 1 (Default) Adverse Events by System Organ Class and Preferred Term Table 1. |
aet02_pre | 'AET02' Table 1 (Default) Adverse Events by System Organ Class and Preferred Term Table 1. |
aet03 | 'AET03' Table 1 (Default) Advert Events by Greatest Intensity Table 1. |
aet03_main | 'AET03' Table 1 (Default) Advert Events by Greatest Intensity Table 1. |
aet03_post | 'AET03' Table 1 (Default) Advert Events by Greatest Intensity Table 1. |
aet03_pre | 'AET03' Table 1 (Default) Advert Events by Greatest Intensity Table 1. |
aet04 | 'AET04' Table 1 (Default) Adverse Events by Highest 'NCI' 'CTACAE' 'AE' Grade Table 1. |
aet04_main | 'AET04' Table 1 (Default) Adverse Events by Highest 'NCI' 'CTACAE' 'AE' Grade Table 1. |
aet04_post | 'AET04' Table 1 (Default) Adverse Events by Highest 'NCI' 'CTACAE' 'AE' Grade Table 1. |
aet04_pre | 'AET04' Table 1 (Default) Adverse Events by Highest 'NCI' 'CTACAE' 'AE' Grade Table 1. |
aet05 | 'AET05' Table 1 (Default) Adverse Event Rate Adjusted for Patient-Years at Risk - First Occurrence. |
aet05_all | 'AET05_ALL' Table 1 (Default) Adverse Event Rate Adjusted for Patient-Years at Risk - All Occurrences. |
aet05_all_pre | 'AET05_ALL' Table 1 (Default) Adverse Event Rate Adjusted for Patient-Years at Risk - All Occurrences. |
aet05_main | 'AET05' Table 1 (Default) Adverse Event Rate Adjusted for Patient-Years at Risk - First Occurrence. |
aet05_post | 'AET05' Table 1 (Default) Adverse Event Rate Adjusted for Patient-Years at Risk - First Occurrence. |
aet05_pre | 'AET05' Table 1 (Default) Adverse Event Rate Adjusted for Patient-Years at Risk - First Occurrence. |
aet10 | 'AET10' Table 1 (Default) Most Common (xx%) Adverse Events Preferred Terms Table 1. |
aet10_main | 'AET10' Table 1 (Default) Most Common (xx%) Adverse Events Preferred Terms Table 1. |
aet10_post | 'AET10' Table 1 (Default) Most Common (xx%) Adverse Events Preferred Terms Table 1. |
aet10_pre | 'AET10' Table 1 (Default) Most Common (xx%) Adverse Events Preferred Terms Table 1. |
args_ls | Get Arguments List |
args_ls-method | Get Arguments List |
assert_single_value | Check variable only has one unique value. |
assert_valid_type | Check variable is of correct type |
assert_valid_var | Check whether var is valid |
assert_valid_var.character | Check whether var is valid |
assert_valid_var.default | Check whether var is valid |
assert_valid_var.factor | Check whether var is valid |
assert_valid_var.logical | Check whether var is valid |
assert_valid_var.numeric | Check whether var is valid |
assert_valid_variable | Check variables in a data frame are valid character or factor. |
assert_valid_var_pair | Check variables are of same levels |
cfbt01 | 'CFBT01' Change from Baseline By Visit Table. |
cfbt01_main | 'CFBT01' Change from Baseline By Visit Table. |
cfbt01_post | 'CFBT01' Change from Baseline By Visit Table. |
cfbt01_pre | 'CFBT01' Change from Baseline By Visit Table. |
chevron | 'chevron' package |
chevron_g | 'chevron_t' |
chevron_g-class | 'chevron_t' |
chevron_graph | 'chevron_t' |
chevron_l | 'chevron_t' |
chevron_l-class | 'chevron_t' |
chevron_listing | 'chevron_t' |
chevron_simple | 'chevron_t' |
chevron_simple-class | 'chevron_t' |
chevron_t | 'chevron_t' |
chevron_t-class | 'chevron_t' |
chevron_table | 'chevron_t' |
chevron_tlg-class | 'chevron_t' |
cmt01a | 'CMT01A' Concomitant Medication by Medication Class and Preferred Name. |
cmt01a_main | 'CMT01A' Concomitant Medication by Medication Class and Preferred Name. |
cmt01a_post | 'CMT01A' Concomitant Medication by Medication Class and Preferred Name. |
cmt01a_pre | 'CMT01A' Concomitant Medication by Medication Class and Preferred Name. |
cmt01_label | 'CMT01A' Concomitant Medication by Medication Class and Preferred Name. |
cmt02_pt | 'CMT02_PT' Table 1 (Default) Concomitant Medications by Preferred Name. |
cmt02_pt_main | 'CMT02_PT' Table 1 (Default) Concomitant Medications by Preferred Name. |
cmt02_pt_post | 'CMT02_PT' Table 1 (Default) Concomitant Medications by Preferred Name. |
cmt02_pt_pre | 'CMT02_PT' Table 1 (Default) Concomitant Medications by Preferred Name. |
convert_to_month | Helper function to convert to months if needed |
coxt01 | 'COXT01' (Default) Cox Regression Model Table. |
coxt01_main | 'COXT01' (Default) Cox Regression Model Table. |
coxt01_post | 'COXT01' (Default) Cox Regression Model Table. |
coxt01_pre | 'COXT01' (Default) Cox Regression Model Table. |
coxt02 | 'COXT02' Multi-Variable Cox Regression Model Table. |
coxt02_main | 'COXT02' Multi-Variable Cox Regression Model Table. |
ctcv4_dir | CTC version 4 Grade Direction Data |
ctcv5_dir | CTC version 5 Grade Direction Data |
dmt01 | 'DMT01' Table 1 (Default) Demographics and Baseline Characteristics Table 1. |
dmt01_main | 'DMT01' Table 1 (Default) Demographics and Baseline Characteristics Table 1. |
dmt01_post | 'DMT01' Table 1 (Default) Demographics and Baseline Characteristics Table 1. |
dmt01_pre | 'DMT01' Table 1 (Default) Demographics and Baseline Characteristics Table 1. |
dst01 | DST01 Table 1 (Default) Patient Disposition Table 1. |
dst01_main | DST01 Table 1 (Default) Patient Disposition Table 1. |
dst01_post | DST01 Table 1 (Default) Patient Disposition Table 1. |
dst01_pre | DST01 Table 1 (Default) Patient Disposition Table 1. |
dtht01 | 'DTHT01' Table 1 (Default) Death Table. |
dtht01_main | 'DTHT01' Table 1 (Default) Death Table. |
dtht01_post | 'DTHT01' Table 1 (Default) Death Table. |
dtht01_pre | 'DTHT01' Table 1 (Default) Death Table. |
dummy_template | Dummy template. |
egt01 | 'EGT01' ECG Parameters and Change from Baseline By Visit Table. |
egt01_main | 'EGT01' ECG Parameters and Change from Baseline By Visit Table. |
egt01_pre | 'EGT01' ECG Parameters and Change from Baseline By Visit Table. |
egt02_1 | 'EGT02' ECG Abnormalities Table. |
egt02_1_main | 'EGT02' ECG Abnormalities Table. |
egt02_2 | 'EGT02_2' ECG Abnormalities Table. |
egt02_2_main | 'EGT02_2' ECG Abnormalities Table. |
egt02_post | 'EGT02' ECG Abnormalities Table. |
egt02_pre | 'EGT02' ECG Abnormalities Table. |
egt03 | 'EGT03' Shift Table of ECG Interval Data - Baseline versus Minimum or Maximum Post-Baseline. |
egt03_main | 'EGT03' Shift Table of ECG Interval Data - Baseline versus Minimum or Maximum Post-Baseline. |
egt03_post | 'EGT03' Shift Table of ECG Interval Data - Baseline versus Minimum or Maximum Post-Baseline. |
egt03_pre | 'EGT03' Shift Table of ECG Interval Data - Baseline versus Minimum or Maximum Post-Baseline. |
egt05_qtcat | 'EGT05_QTCAT' ECG Actual Values and Changes from Baseline by Visit Table. |
egt05_qtcat_main | 'EGT05_QTCAT' ECG Actual Values and Changes from Baseline by Visit Table. |
egt05_qtcat_post | 'EGT05_QTCAT' ECG Actual Values and Changes from Baseline by Visit Table. |
egt05_qtcat_pre | 'EGT05_QTCAT' ECG Actual Values and Changes from Baseline by Visit Table. |
empty_rule | Empty rule |
ext01 | 'EXT01' Exposure Summary Table. |
ext01_main | 'EXT01' Exposure Summary Table. |
ext01_post | 'EXT01' Exposure Summary Table. |
ext01_pre | 'EXT01' Exposure Summary Table. |
fstg01 | 'FSTG01' Subgroup Analysis of Best Overall Response. |
fstg01_main | 'FSTG01' Subgroup Analysis of Best Overall Response. |
fstg01_pre | 'FSTG01' Subgroup Analysis of Best Overall Response. |
fstg02 | 'FSTG02' Subgroup Analysis of Survival Duration. |
fstg02_main | 'FSTG02' Subgroup Analysis of Survival Duration. |
fstg02_pre | 'FSTG02' Subgroup Analysis of Survival Duration. |
gen_args | General Argument Name Convention |
get_grade_rule | Get grade rule |
get_section_div | Get Section dividers |
gg_list | List of 'gg' object |
gg_theme_chevron | Theme for Chevron Plot |
grob_list | List of 'grob' object |
h_format_dec | Decimal formatting |
kmg01 | 'KMG01' Kaplan-Meier Plot 1. |
kmg01_main | 'KMG01' Kaplan-Meier Plot 1. |
kmg01_pre | 'KMG01' Kaplan-Meier Plot 1. |
lbt01 | 'LBT01' Lab Results and Change from Baseline by Visit Table. |
lbt01_main | 'LBT01' Lab Results and Change from Baseline by Visit Table. |
lbt01_pre | 'LBT01' Lab Results and Change from Baseline by Visit Table. |
lbt04 | 'LBT04' Laboratory Abnormalities Not Present at Baseline Table. |
lbt04_main | 'LBT04' Laboratory Abnormalities Not Present at Baseline Table. |
lbt04_post | 'LBT04' Laboratory Abnormalities Not Present at Baseline Table. |
lbt04_pre | 'LBT04' Laboratory Abnormalities Not Present at Baseline Table. |
lbt05 | 'LBT05' Table 1 (Default) Laboratory Abnormalities with Single and Replicated Marked. |
lbt05_main | 'LBT05' Table 1 (Default) Laboratory Abnormalities with Single and Replicated Marked. |
lbt05_post | 'LBT05' Table 1 (Default) Laboratory Abnormalities with Single and Replicated Marked. |
lbt05_pre | 'LBT05' Table 1 (Default) Laboratory Abnormalities with Single and Replicated Marked. |
lbt06 | 'LBT06' Table 1 (Default) Laboratory Abnormalities by Visit and Baseline Status Table 1. |
lbt06_main | 'LBT06' Table 1 (Default) Laboratory Abnormalities by Visit and Baseline Status Table 1. |
lbt06_post | 'LBT06' Table 1 (Default) Laboratory Abnormalities by Visit and Baseline Status Table 1. |
lbt06_pre | 'LBT06' Table 1 (Default) Laboratory Abnormalities by Visit and Baseline Status Table 1. |
lbt07 | 'LBT07' Table 1 (Default) Laboratory Test Results and Change from Baseline by Visit. |
lbt07_main | 'LBT07' Table 1 (Default) Laboratory Test Results and Change from Baseline by Visit. |
lbt07_post | 'LBT07' Table 1 (Default) Laboratory Test Results and Change from Baseline by Visit. |
lbt07_pre | 'LBT07' Table 1 (Default) Laboratory Test Results and Change from Baseline by Visit. |
lbt14 | 'LBT14' Laboratory Test Results Shift Table – Highest 'NCI-CTCAE' Grade Post-Baseline by Baseline Grade (Low or High Direction). |
lbt14_main | 'LBT14' Laboratory Test Results Shift Table – Highest 'NCI-CTCAE' Grade Post-Baseline by Baseline Grade (Low or High Direction). |
lbt14_post | 'LBT14' Laboratory Test Results Shift Table – Highest 'NCI-CTCAE' Grade Post-Baseline by Baseline Grade (Low or High Direction). |
lbt14_pre | 'LBT14' Laboratory Test Results Shift Table – Highest 'NCI-CTCAE' Grade Post-Baseline by Baseline Grade (Low or High Direction). |
lbt15 | 'LBT15' Laboratory Test Shifts to 'NCI-CTCAE' Grade 3-4 Post-Baseline Table. |
lbt15_pre | 'LBT15' Laboratory Test Shifts to 'NCI-CTCAE' Grade 3-4 Post-Baseline Table. |
lvls | Obtain levels from vector |
main | Main |
main-method | Main |
main<- | Main |
main<--method | Main |
mht01 | 'MHT01' Medical History Table. |
mht01_label | 'MHT01' Medical History Table. |
mht01_main | 'MHT01' Medical History Table. |
mht01_post | 'MHT01' Medical History Table. |
mht01_pre | 'MHT01' Medical History Table. |
missing_rule | Missing rule |
mla_dir | MLA Grade Direction Data |
mng01 | 'MNG01' Mean Plot Graph. |
mng01_main | 'MNG01' Mean Plot Graph. |
mng01_pre | 'MNG01' Mean Plot Graph. |
nocoding | No Coding Available rule |
null_listing | Create a Null Report |
null_report | Create a Null Report |
pdt01 | 'pdt01' Major Protocol Deviations Table. |
pdt01_main | 'pdt01' Major Protocol Deviations Table. |
pdt01_post | 'pdt01' Major Protocol Deviations Table. |
pdt01_pre | 'pdt01' Major Protocol Deviations Table. |
pdt02 | 'pdt02' Major Protocol Deviations Related to Epidemic/Pandemic Table. |
pdt02_main | 'pdt02' Major Protocol Deviations Related to Epidemic/Pandemic Table. |
pdt02_post | 'pdt02' Major Protocol Deviations Related to Epidemic/Pandemic Table. |
pdt02_pre | 'pdt02' Major Protocol Deviations Related to Epidemic/Pandemic Table. |
postprocess | Post process |
postprocess-method | Post process |
postprocess<- | Post process |
postprocess<--method | Post process |
preprocess | Pre process |
preprocess-method | Pre process |
preprocess<- | Pre process |
preprocess<--method | Pre process |
report_null | Create a Null Report |
rmpt01 | 'RMPT01'Duration of Exposure for Risk Management Plan Table. |
rmpt01_main | 'RMPT01'Duration of Exposure for Risk Management Plan Table. |
rmpt01_post | 'RMPT01'Duration of Exposure for Risk Management Plan Table. |
rmpt01_pre | 'RMPT01'Duration of Exposure for Risk Management Plan Table. |
rmpt03 | 'rmpt03'Duration of Exposure for Risk Management Plan Table. |
rmpt03_main | 'rmpt03'Duration of Exposure for Risk Management Plan Table. |
rmpt03_pre | 'rmpt03'Duration of Exposure for Risk Management Plan Table. |
rmpt04 | 'RMPT04'Extent of Exposure by Ethnic Origin for Risk Management Plan Table. |
rmpt04_main | 'RMPT04'Extent of Exposure by Ethnic Origin for Risk Management Plan Table. |
rmpt04_pre | 'RMPT04'Extent of Exposure by Ethnic Origin for Risk Management Plan Table. |
rmpt05 | 'RMPT05' Extent of Exposure by Race for Risk Management Plan Table. |
rmpt05_main | 'RMPT05' Extent of Exposure by Race for Risk Management Plan Table. |
rmpt05_pre | 'RMPT05' Extent of Exposure by Race for Risk Management Plan Table. |
rmpt06 | 'RMPT06' Table 1 (Default) Seriousness, Outcomes, Severity, Frequency with 95% CI for Risk Management Plan. |
rmpt06_main | 'RMPT06' Table 1 (Default) Seriousness, Outcomes, Severity, Frequency with 95% CI for Risk Management Plan. |
rmpt06_post | 'RMPT06' Table 1 (Default) Seriousness, Outcomes, Severity, Frequency with 95% CI for Risk Management Plan. |
rmpt06_pre | 'RMPT06' Table 1 (Default) Seriousness, Outcomes, Severity, Frequency with 95% CI for Risk Management Plan. |
rspt01 | 'RSPT01' Binary Outcomes Summary. |
rspt01_main | 'RSPT01' Binary Outcomes Summary. |
rspt01_post | 'RSPT01' Binary Outcomes Summary. |
rspt01_pre | 'RSPT01' Binary Outcomes Summary. |
run | Run the pipeline |
run-method | Run the pipeline |
script | Create Script for 'TLG' Generation |
script_funs | Create Script for 'TLG' Generation |
script_funs-method | Create Script for 'TLG' Generation |
set_section_div | Set Section Dividers |
smart_prune | Prune table up to an 'ElementaryTable' |
syn_data | Example 'adam' Synthetic Data |
ttet01 | 'TTET01' Binary Outcomes Summary. |
ttet01_main | 'TTET01' Binary Outcomes Summary. |
ttet01_post | 'TTET01' Binary Outcomes Summary. |
ttet01_pre | 'TTET01' Binary Outcomes Summary. |
var_labels_for | Retrieve labels for certain variables |
vst01 | 'VST01' Vital Sign Results and change from Baseline By Visit Table. |
vst01_main | 'VST01' Vital Sign Results and change from Baseline By Visit Table. |
vst01_pre | 'VST01' Vital Sign Results and change from Baseline By Visit Table. |
vst02_1 | 'VST02' Vital Sign Abnormalities Table. |
vst02_1_main | 'VST02' Vital Sign Abnormalities Table. |
vst02_2 | 'VST02' Vital Sign Abnormalities Table. |
vst02_2_main | 'VST02' Vital Sign Abnormalities Table. |
vst02_post | 'VST02' Vital Sign Abnormalities Table. |
vst02_pre | 'VST02' Vital Sign Abnormalities Table. |
.chevron_g | 'chevron_t' |
.chevron_l | 'chevron_t' |
.chevron_simple | 'chevron_t' |
.chevron_t | 'chevron_t' |
.chevron_tlg | 'chevron_t' |