adj_CDF_logit |
A novel data representation based on Poisson probability |
cluster_size |
Cluster size |
clust_clean |
Cluster label clean |
diff_gene_list |
Differential expression analysis |
fwer_cutoff-shc |
get FWER cutoffs for shc object |
fwer_cutoff.shc |
get FWER cutoffs for shc object |
get_example_data |
get example data |
HclustDepart |
Cluster cells in a recursive way |
interpolate |
Linear interpolation for one sample given reference sample |
logit |
Logit transformation |
LouvainDepart |
Louvain clustering using departure as data representation |
nboot_small |
Random sample generation function to generate sets of samples from theoretical Poisson distribution. |
new_quantile |
A more "continuous" approximation of quantiles of samples with a few integer case |
new_quantile_pois |
A more "continuous" approximation of quantiles from the theoretical Poisson distribution. |
para_est_new |
Parameter estimates based on two-way approximation |
qqplot_env_pois |
Q-Q plot comparing samples with a theoretical Poisson distribution |
qqplot_small_test |
Q-Q plot comparing two samples with small discrete counts |
qq_interpolation |
Paired quantile after interpolation between two samples |
scppp |
Generate New scppp object |
sigp |
Significance for first split using sigclust2 |
theme_dirk |
Dirk theme ggplots |