Single Cell Poisson Probability Paradigm

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Documentation for package ‘scpoisson’ version 0.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

adj_CDF_logit	A novel data representation based on Poisson probability
cluster_size	Cluster size
clust_clean	Cluster label clean
diff_gene_list	Differential expression analysis
fwer_cutoff-shc	get FWER cutoffs for shc object
fwer_cutoff.shc	get FWER cutoffs for shc object
get_example_data	get example data
HclustDepart	Cluster cells in a recursive way
interpolate	Linear interpolation for one sample given reference sample
logit	Logit transformation
LouvainDepart	Louvain clustering using departure as data representation
nboot_small	Random sample generation function to generate sets of samples from theoretical Poisson distribution.
new_quantile	A more "continuous" approximation of quantiles of samples with a few integer case
new_quantile_pois	A more "continuous" approximation of quantiles from the theoretical Poisson distribution.
para_est_new	Parameter estimates based on two-way approximation
qqplot_env_pois	Q-Q plot comparing samples with a theoretical Poisson distribution
qqplot_small_test	Q-Q plot comparing two samples with small discrete counts
qq_interpolation	Paired quantile after interpolation between two samples
scppp	Generate New scppp object
sigp	Significance for first split using sigclust2
theme_dirk	Dirk theme ggplots