ukbtools-package |
ukbtools: Manipulate and Explore UK Biobank Data |
icd10chapters |
International Classification of Diseases Revision 10 (ICD-10) chapters |
icd10codes |
International Classification of Diseases Revision 10 (ICD-10) codes |
icd9chapters |
International Classification of Diseases Revision 9 (ICD-9) chapters |
icd9codes |
International Classification of Diseases Revision 9 (ICD-9) codes |
ukbcentre |
UKB assessment centre |
ukbtools |
ukbtools: Manipulate and Explore UK Biobank Data |
ukb_centre |
Inserts UKB centre names into data |
ukb_context |
Demographics of a UKB sample subset |
ukb_defunct |
Defunct genetic metadata functions |
ukb_df |
Reads a UK Biobank phenotype fileset and returns a single dataset. |
ukb_df_duplicated_name |
Checks for duplicated names within a UKB dataset |
ukb_df_field |
Makes a UKB data-field to variable name table for reference or lookup. |
ukb_df_full_join |
Recursively join a list of UKB datasets |
ukb_gen_excl |
Sample exclusions |
ukb_gen_excl_to_na |
Inserts NA into phenotype for genetic metadata exclusions |
ukb_gen_het |
Heterozygosity outliers |
ukb_gen_meta |
Genetic metadata |
ukb_gen_pcs |
Genetic principal components |
ukb_gen_read_fam |
Reads a PLINK format fam file |
ukb_gen_read_sample |
Reads an Oxford format sample file |
ukb_gen_rel |
Creates a table of related individuals |
ukb_gen_related_with_data |
Subset of the UKB relatedness dataframe with data |
ukb_gen_rel_count |
Relatedness count |
ukb_gen_samples_to_remove |
Related samples (with data on the variable of interest) to remove |
ukb_gen_sqc_names |
Sample QC column names |
ukb_gen_write_bgenie |
Writes a BGENIE format phenotype or covariate file. |
ukb_gen_write_plink |
Writes a PLINK format phenotype or covariate file |
ukb_gen_write_plink_excl |
Writes a PLINK format file for combined exclusions |
ukb_icd_code_meaning |
Retrieves description for a ICD code. |
ukb_icd_diagnosis |
Retrieves diagnoses for an individual. |
ukb_icd_freq_by |
Frequency of an ICD diagnosis by a target variable |
ukb_icd_keyword |
Retrieves diagnoses containing a description. |
ukb_icd_prevalence |
Returns the prevalence for an ICD diagnosis |